Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10a04f
(664 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4015| Best HMM Match : F-box (HMM E-Value=5.9e-11) 71 1e-12
SB_29471| Best HMM Match : F-box (HMM E-Value=2.8e-08) 65 6e-11
SB_43663| Best HMM Match : F-box (HMM E-Value=4e-07) 64 1e-10
SB_28962| Best HMM Match : F-box (HMM E-Value=6.3e-10) 60 1e-09
SB_43342| Best HMM Match : F-box (HMM E-Value=4.1e-09) 58 6e-09
SB_46499| Best HMM Match : F-box (HMM E-Value=1.2e-11) 57 1e-08
SB_14328| Best HMM Match : F-box (HMM E-Value=6.6e-09) 55 4e-08
SB_41663| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 8e-08
SB_10280| Best HMM Match : F-box (HMM E-Value=5.2e-09) 54 1e-07
SB_34144| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_12443| Best HMM Match : WD40 (HMM E-Value=1e-24) 46 4e-05
SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_31644| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_41867| Best HMM Match : F-box (HMM E-Value=4.5e-08) 42 4e-04
SB_9425| Best HMM Match : F-box (HMM E-Value=1.1e-11) 42 4e-04
SB_49097| Best HMM Match : F-box (HMM E-Value=1.6e-07) 40 0.001
SB_41994| Best HMM Match : F-box (HMM E-Value=1.4e-06) 40 0.001
SB_51704| Best HMM Match : F-box (HMM E-Value=3.3e-05) 40 0.002
SB_11436| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_764| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_17611| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_52387| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.010
SB_6560| Best HMM Match : F-box (HMM E-Value=2e-10) 37 0.013
SB_34371| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.013
SB_13832| Best HMM Match : LRR_1 (HMM E-Value=5.4e-10) 36 0.022
SB_20853| Best HMM Match : F-box (HMM E-Value=1.1e-05) 36 0.039
SB_20039| Best HMM Match : LRR_1 (HMM E-Value=0.0061) 35 0.051
SB_50716| Best HMM Match : WD40 (HMM E-Value=0) 35 0.068
SB_27068| Best HMM Match : F-box (HMM E-Value=5.2e-09) 33 0.16
SB_22456| Best HMM Match : LRR_1 (HMM E-Value=1.4e-11) 33 0.27
SB_38067| Best HMM Match : DUF525 (HMM E-Value=2.5e-12) 33 0.27
SB_29771| Best HMM Match : F-box (HMM E-Value=5.6e-08) 32 0.36
SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.48
SB_41815| Best HMM Match : zf-CXXC (HMM E-Value=3.5e-17) 31 0.63
SB_17790| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_2401| Best HMM Match : TSP_1 (HMM E-Value=0) 28 5.9
SB_18672| Best HMM Match : F-box (HMM E-Value=0.002) 28 7.8
SB_1687| Best HMM Match : LRR_2 (HMM E-Value=4.6e-07) 28 7.8
SB_57728| Best HMM Match : Usp (HMM E-Value=3.9e-20) 28 7.8
SB_54663| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
>SB_4015| Best HMM Match : F-box (HMM E-Value=5.9e-11)
Length = 130
Score = 70.5 bits (165), Expect = 1e-12
Identities = 27/58 (46%), Positives = 43/58 (74%)
Frame = +1
Query: 211 LSSSFRRRQMTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHVSL 384
+S+ ++++ +IE+LPD VLL +FS+L R +C++A VC+RWR +A+D LW VSL
Sbjct: 14 ISNDSKKQEKPSIERLPDSVLLQVFSFLCQRSLCKLALVCKRWRDIAFDGSLWRDVSL 71
>SB_29471| Best HMM Match : F-box (HMM E-Value=2.8e-08)
Length = 473
Score = 64.9 bits (151), Expect = 6e-11
Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 2/129 (1%)
Frame = +1
Query: 247 IEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHVSLRPEISGLHVXXXXX 426
++ LPD V+L +FS+L+ ++ +++ VC +W+ +AYD LW V+LR ++
Sbjct: 1 MDGLPDVVVLKVFSFLSVADLGQVSRVCYQWQRIAYDHSLWKAVNLRRFAGSIN---EEI 57
Query: 427 XXXXXXXRFGPSLRYIELPIELITHTVLHELAAKCPNLTHMLLDFSTAMQ--LHDFSEMQ 600
RF P L + L I+H VL EL KC +L +++ + ++ L S +
Sbjct: 58 LTALIRTRFSPQLVTLNLGGCRISHEVLMELTRKCKHLRYLIFGRGSKLRSPLLKRSVVY 117
Query: 601 AFPTKLRYL 627
FP +L L
Sbjct: 118 EFPPELELL 126
>SB_43663| Best HMM Match : F-box (HMM E-Value=4e-07)
Length = 717
Score = 64.1 bits (149), Expect = 1e-10
Identities = 41/131 (31%), Positives = 60/131 (45%)
Frame = +1
Query: 241 TTIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHVSLRPEISGLHVXXX 420
T I +LP+ LL +F YL ++ R+A C WR +AYD LWT V LR +
Sbjct: 309 THIAELPESCLLRVFFYLDEAQLGRVARTCTTWRRIAYDCSLWTRVDLRRYQDKI---DE 365
Query: 421 XXXXXXXXXRFGPSLRYIELPIELITHTVLHELAAKCPNLTHMLLDFSTAMQLHDFSEMQ 600
R P L + L ++ V LA +C L + L+ ST ++ + +
Sbjct: 366 LRLTKIIQSRMSPLLYKLNLSGLTLSPRVFRLLAKECKKLRVLSLESSTFVEQFE-DAVN 424
Query: 601 AFPTKLRYLCI 633
+FP L YL I
Sbjct: 425 SFPRNLDYLDI 435
>SB_28962| Best HMM Match : F-box (HMM E-Value=6.3e-10)
Length = 447
Score = 60.5 bits (140), Expect = 1e-09
Identities = 45/130 (34%), Positives = 59/130 (45%), Gaps = 5/130 (3%)
Frame = +1
Query: 253 KLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHVSLRPEISGLHVXXXXXXX 432
KLPD VLL IF YL+ R++ +A VC++WR +AYD LW V L E+
Sbjct: 4 KLPDAVLLEIFLYLSRRDLGVVARVCKQWRRIAYDPSLWRTVDLN-ELLAWTTIDEATLL 62
Query: 433 XXXXXRFGPSLRYIELPIELITHTVLHELAAKCPNL--THMLLDFSTAMQLHDFSEMQAF 606
R S + L +T V ELA K P++ L DFS M+
Sbjct: 63 MLIKTRLA-SATALNLAGCSVTPKVAKELAKKMPSIEXXXXLELMDLRYSWGDFSFMRRL 121
Query: 607 P---TKLRYL 627
P T +RYL
Sbjct: 122 PRHFTNVRYL 131
>SB_43342| Best HMM Match : F-box (HMM E-Value=4.1e-09)
Length = 456
Score = 58.0 bits (134), Expect = 6e-09
Identities = 35/129 (27%), Positives = 62/129 (48%)
Frame = +1
Query: 241 TTIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHVSLRPEISGLHVXXX 420
T I +L + V+L IFSYL+ ++ + A VC+RW +++D LW +V L+ L
Sbjct: 44 TRISELDNPVILKIFSYLSRADLLKAAEVCKRWHELSFDRSLWRNVDLKGYCKTL--MQG 101
Query: 421 XXXXXXXXXRFGPSLRYIELPIELITHTVLHELAAKCPNLTHMLLDFSTAMQLHDFSEMQ 600
++ ++L ++T ++L LA CP L +++ S Q +
Sbjct: 102 ERITEVTEKYLVSNVVALDLSGFMLTDSILGTLANNCPELRKLVVK-SVNFQTQGKEKEV 160
Query: 601 AFPTKLRYL 627
FP L++L
Sbjct: 161 LFPKHLKFL 169
>SB_46499| Best HMM Match : F-box (HMM E-Value=1.2e-11)
Length = 335
Score = 56.8 bits (131), Expect = 1e-08
Identities = 35/110 (31%), Positives = 48/110 (43%), Gaps = 3/110 (2%)
Frame = +1
Query: 235 QMTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHVSLRPEISGLHVX 414
Q I PD V+LNIF YL + +C + VCRRW + D LW V LRP L +
Sbjct: 22 QTALICSFPDNVMLNIFRYLDIKALCAASKVCRRWYHLGKDRSLWKAVDLRPWPLALRIL 81
Query: 415 XXXXXXXXXXXRFGPSLRYI---ELPIELITHTVLHELAAKCPNLTHMLL 555
++ E I+ ++L E+ KCPNL + L
Sbjct: 82 WKVVRNRLCETVTELQIKGFLGTTKKHENISFSLLEEIKTKCPNLEKLTL 131
>SB_14328| Best HMM Match : F-box (HMM E-Value=6.6e-09)
Length = 425
Score = 55.2 bits (127), Expect = 4e-08
Identities = 39/125 (31%), Positives = 59/125 (47%)
Frame = +1
Query: 256 LPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHVSLRPEISGLHVXXXXXXXX 435
L + VLL +FSYL E+ +++ VC++W VA D +LW V L + +
Sbjct: 34 LDEAVLLKVFSYLRLGELLQVSRVCKQWNRVARDLQLWKTVDL--SVMTAYFKGEDRVEA 91
Query: 436 XXXXRFGPSLRYIELPIELITHTVLHELAAKCPNLTHMLLDFSTAMQLHDFSEMQAFPTK 615
LR + L IT V +AA CP L ++L ST +++ SE+ P K
Sbjct: 92 FLKKNPVSRLRELNLSGLRITSNVFKVIAAHCPRLRKLVLK-STELRVSPDSEIS--PNK 148
Query: 616 LRYLC 630
L + C
Sbjct: 149 LVFPC 153
>SB_41663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 54.4 bits (125), Expect = 8e-08
Identities = 21/48 (43%), Positives = 32/48 (66%)
Frame = +1
Query: 235 QMTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHV 378
Q+T I LP ++L IFSYL +++CR + VC+ W + A D +LW H+
Sbjct: 108 QVTLIHNLPPEILNKIFSYLNPKDLCRTSQVCKSWSVFAKDGQLWKHL 155
>SB_10280| Best HMM Match : F-box (HMM E-Value=5.2e-09)
Length = 438
Score = 53.6 bits (123), Expect = 1e-07
Identities = 21/48 (43%), Positives = 32/48 (66%)
Frame = +1
Query: 241 TTIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHVSL 384
+ I LP+ +LLNIFSYLT E+C + VC +W+ + +D LWT + +
Sbjct: 303 SAINNLPEDLLLNIFSYLTTPELCLASGVCCKWQYLCWDPVLWTSIKI 350
>SB_34144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 46.8 bits (106), Expect = 2e-05
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Frame = +1
Query: 256 LPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHVSLRP-EISGLHVXXXXXXX 432
LPD + L IFSY + +E +A VCR W ++ D++ W V R +SG
Sbjct: 28 LPDDIWLQIFSYFSVKERASLARVCREWNILCRDSRFWGAVDFRSCHVSG----EITDKI 83
Query: 433 XXXXXRFGPSLRYIELP---IELITHTVLHELAAKCPNLTHMLL 555
+ +R I+ +T T L +A CP L + L
Sbjct: 84 VESVVAYSCKIRIIDFSSKRCHAVTDTSLTHVANHCPGLQRLNL 127
>SB_12443| Best HMM Match : WD40 (HMM E-Value=1e-24)
Length = 515
Score = 45.6 bits (103), Expect = 4e-05
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +1
Query: 250 EKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHVSLRP-EISGL 405
+ LPD +LL IF +LT +E+ VCR+W + D LW + ++ +SG+
Sbjct: 26 QDLPDSLLLFIFGFLTPKEVLTAGEVCRKWHRASMDEVLWKSIFIKSYNLSGI 78
>SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2806
Score = 44.8 bits (101), Expect = 6e-05
Identities = 17/43 (39%), Positives = 30/43 (69%)
Frame = +1
Query: 256 LPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHVSL 384
LPD+++L IFS L+H+++ A VC+++ +A D LW ++L
Sbjct: 2708 LPDEIVLKIFSSLSHKDLATCALVCQQFYRIAMDETLWGSITL 2750
>SB_31644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 935
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +1
Query: 280 IFSYLTHREICRMATVCRRWRMVAYDTKLWTHVSL 384
+F YL E+CR+ATVCR WR ++ LW V L
Sbjct: 623 VFRYLDPLELCRLATVCREWRSLSEHPSLWQRVVL 657
>SB_41867| Best HMM Match : F-box (HMM E-Value=4.5e-08)
Length = 607
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +1
Query: 211 LSSSFRRRQMTTIEKLPDKVLLNIFSYLTHREI---CRMATVCRRWRMVAYDTKLWTHV 378
++SSF + T I+ LP+ VLL IF L ++ I R+ VC+ W + D+ LW V
Sbjct: 1 MASSFCQIMETNIQDLPETVLLQIFHELANKRIYNLFRLRLVCKSWYELTKDSSLWKFV 59
>SB_9425| Best HMM Match : F-box (HMM E-Value=1.1e-11)
Length = 376
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = +1
Query: 199 TRDELSSSFRRRQMTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLW 369
T E + + T +PD VLL I S+L ++ + VCRRW V D LW
Sbjct: 53 TNGENNGEHSKTFNTVFSDIPDTVLLLILSHLNTQDRAHASMVCRRWNRVCRDATLW 109
>SB_49097| Best HMM Match : F-box (HMM E-Value=1.6e-07)
Length = 190
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/48 (41%), Positives = 28/48 (58%)
Frame = +1
Query: 244 TIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHVSLR 387
TI L ++L IF+YL+ R+ R+A VC +WR AY +W V R
Sbjct: 8 TIHCLFPEILALIFAYLSVRDKGRVAQVCTKWRDAAYSRIVWRGVQAR 55
>SB_41994| Best HMM Match : F-box (HMM E-Value=1.4e-06)
Length = 1020
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +1
Query: 256 LPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHVSL 384
+ D V++ +F +L R + + VCRRW + D+ LWT + L
Sbjct: 564 IADDVIIAVFRFLDMRNLLSASLVCRRWYRLTQDSSLWTDLDL 606
>SB_51704| Best HMM Match : F-box (HMM E-Value=3.3e-05)
Length = 337
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +1
Query: 238 MTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHVSLR 387
MT ++L D +L + L HR+ICR A VC R+ +A ++W +R
Sbjct: 13 MTLADELVDMILA--YDLLDHRDICRFAQVCSRFNAIATSNEVWRRRCVR 60
>SB_11436| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 640
Score = 39.5 bits (88), Expect = 0.002
Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 3/134 (2%)
Frame = +1
Query: 247 IEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHVSLRPEISGLHVXXXXX 426
+ + D +LL IF +L + + VC +W + +D +W ++L ++ L
Sbjct: 39 LSNVTDFLLLKIFHFLPIKSRLSLRCVCWKWYQLLFDFSIWQKINLGDDLELLSSGRCFE 98
Query: 427 XXXXXXXRFGPSLRYIEL-PIELITHTVLHELAAKCPNLTHMLLDFSTAMQLHDFS--EM 597
FG ++ +++ + + ++ +A CPNL LD ++ D S E+
Sbjct: 99 FFTEWIFYFGARVQEVDVGGVAWVDDRMVVLIAQNCPNLKR--LDLKACFKVTDASLKEV 156
Query: 598 QAFPTKLRYLCICL 639
+ T L CI L
Sbjct: 157 ARYCTNLE--CINL 168
>SB_764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 445
Score = 38.3 bits (85), Expect = 0.006
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +1
Query: 256 LPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHVSL 384
LP V++ I S+L ++ R+A VCR+W + D LW ++L
Sbjct: 112 LPHVVMVGIVSFLDIKDRGRVACVCRKWHEICNDPSLWRTLNL 154
>SB_17611| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 313
Score = 37.9 bits (84), Expect = 0.007
Identities = 16/47 (34%), Positives = 31/47 (65%)
Frame = +1
Query: 247 IEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHVSLR 387
++ LPD++L+NIF +L R++ ++ +CRR+R + + +VS R
Sbjct: 1 MDLLPDELLVNIFRHLPARDLIALSFLCRRFRRLLDSVQFNRYVSFR 47
>SB_52387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1088
Score = 37.5 bits (83), Expect = 0.010
Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Frame = +1
Query: 247 IEKLPDKVLLNIFSYL--THREICRMATVCRRWRMVAYDTK-LWTHVSL 384
+E LP++++ +IFS+ + ++ + TVCR+W+++ + LW H+ L
Sbjct: 1 MESLPEEMIAHIFSFFHQIYGKLLLLRTVCRKWKIIIDSSSVLWKHIHL 49
>SB_6560| Best HMM Match : F-box (HMM E-Value=2e-10)
Length = 216
Score = 37.1 bits (82), Expect = 0.013
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +1
Query: 247 IEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLW 369
+E L VLL+IFS+L + +C + VC++W V+ + LW
Sbjct: 1 MEILGTDVLLHIFSHLDAQSLCSCSQVCKQWYEVSTISSLW 41
>SB_34371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 644
Score = 37.1 bits (82), Expect = 0.013
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = +1
Query: 175 VDTATIAITRDELSSSFRRRQMTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAY 354
+DT ++ R + + R Q I LP ++ L + S+L ++ A C+ W+++
Sbjct: 181 IDTCEPSLVRHMMGTIEPRFQRDFISLLPRELALYVLSFLEPSDLLHAAQTCKCWQILCE 240
Query: 355 DTKLW 369
D LW
Sbjct: 241 DNLLW 245
>SB_13832| Best HMM Match : LRR_1 (HMM E-Value=5.4e-10)
Length = 637
Score = 36.3 bits (80), Expect = 0.022
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +1
Query: 256 LPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHVSL 384
+PD V ++FS+L E +A VCR WR + Y LW +V +
Sbjct: 13 IPD-VACHVFSFLQTHEKQAVALVCRFWRNIVYLPSLWKNVQV 54
>SB_20853| Best HMM Match : F-box (HMM E-Value=1.1e-05)
Length = 637
Score = 35.5 bits (78), Expect = 0.039
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +1
Query: 262 DKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHVSLR 387
D++LL IF Y + ++ +VC++W ++ LW + LR
Sbjct: 6 DEILLQIFRYFDAFILTKICSVCKQWNSISKTPSLWRRLVLR 47
>SB_20039| Best HMM Match : LRR_1 (HMM E-Value=0.0061)
Length = 608
Score = 35.1 bits (77), Expect = 0.051
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 298 HREICRMATVCRRWRMVAYDTK-LWTHVS 381
H + R+A VCRRWR + Y+T LW ++S
Sbjct: 128 HDSLLRLAVVCRRWRDIIYNTPILWKNLS 156
>SB_50716| Best HMM Match : WD40 (HMM E-Value=0)
Length = 494
Score = 34.7 bits (76), Expect = 0.068
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 262 DKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLW 369
D + NI S+L + +C VC+ W V D LW
Sbjct: 79 DHIAENILSFLDAKSLCAAEVVCKEWHRVIADGMLW 114
>SB_27068| Best HMM Match : F-box (HMM E-Value=5.2e-09)
Length = 247
Score = 33.5 bits (73), Expect = 0.16
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +1
Query: 253 KLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHVSL 384
+LP +V + I +L+ ++C+ A V + W+ +A D LW + +
Sbjct: 150 QLPREVGMKILGHLSMWDLCQCAIVSKSWKSLAEDELLWFKIGV 193
>SB_22456| Best HMM Match : LRR_1 (HMM E-Value=1.4e-11)
Length = 459
Score = 32.7 bits (71), Expect = 0.27
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 253 KLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHVS 381
+LP +V+ IFS+L +I A VC W + D LW + +
Sbjct: 18 QLPQEVVSYIFSFLPLADIKSSARVCHLWAKASDDPLLWKNTT 60
>SB_38067| Best HMM Match : DUF525 (HMM E-Value=2.5e-12)
Length = 433
Score = 32.7 bits (71), Expect = 0.27
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 244 TIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLW 369
+++ LP L ++ SYL R++ R + VCRR+ + W
Sbjct: 13 SLDNLPTIPLASVLSYLNARDLARCSRVCRRFDEICSSLPSW 54
>SB_29771| Best HMM Match : F-box (HMM E-Value=5.6e-08)
Length = 210
Score = 32.3 bits (70), Expect = 0.36
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +1
Query: 253 KLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHV 378
+LP +++I SYL ++ R+ +VC+ R V +LW +
Sbjct: 93 RLPSNTVVHIASYLDLIDVSRLGSVCKFLRKVCSSDELWEKI 134
>SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 31.9 bits (69), Expect = 0.48
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 256 LPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHVSLR 387
LP L+ +F +L +++ A VC+ WR A + LW LR
Sbjct: 6 LPLDELVLVFDFLHPKDLVNAAQVCKLWREAAGVSSLWKKHCLR 49
>SB_41815| Best HMM Match : zf-CXXC (HMM E-Value=3.5e-17)
Length = 906
Score = 31.5 bits (68), Expect = 0.63
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 274 LNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHVSL 384
L++F +L+ E+C VCR + A D W+ + +
Sbjct: 635 LHVFGFLSQEELCLCMRVCRTFNRWAMDKHFWSVIDM 671
>SB_17790| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +1
Query: 259 PDKVLLNIFSYLTHREICRMATVCRRWR--MVAYDTKLW 369
PD VL I L+ +++ R+ VCR W+ M+ +++W
Sbjct: 15 PDLVLGKILDCLSLQDLGRLPQVCRYWKESMIFTSSRIW 53
>SB_2401| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 818
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1
Query: 298 VLDTRKCSIKPCPEVFRWSSF 236
VL T C+ KPCP WS F
Sbjct: 429 VLKTEACNTKPCPVNGAWSDF 449
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -1
Query: 292 DTRKCSIKPCPEVFRWSSFVSFENST 215
+T+ C I PCP WS F + + T
Sbjct: 488 ETKACGISPCPVNGGWSDFSKWSSCT 513
>SB_18672| Best HMM Match : F-box (HMM E-Value=0.002)
Length = 699
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 256 LPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLW 369
LP + + IFS+L R + R A V W+ + +W
Sbjct: 142 LPRFISMYIFSFLDPRSLSRGAMVSWHWKFLCEQDDIW 179
>SB_1687| Best HMM Match : LRR_2 (HMM E-Value=4.6e-07)
Length = 483
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +1
Query: 154 DSWGILNVDTATIAITRDELSSSFRRRQMTTIEKLPDKVLLNIFSYLTHREI-CRMATVC 330
D G + D A +A RD + S+ + LP++V+L I SY+ +++ + V
Sbjct: 58 DDGGDDHNDDAGVADARDAVQSN-------VFDLLPEEVILEILSYIPLKQLYTSIPFVS 110
Query: 331 RRWRMVAYDTKLW 369
++W A + LW
Sbjct: 111 KQWYANAKNPLLW 123
>SB_57728| Best HMM Match : Usp (HMM E-Value=3.9e-20)
Length = 744
Score = 27.9 bits (59), Expect = 7.8
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Frame = +1
Query: 169 LNVDTATIAITRDELSSSFRRRQMTTIEKLPDKVLLNIFSYLTH--REICRMATVC-RRW 339
L V ++ +T L + Q+T + + L + L+H R+ CR++T RRW
Sbjct: 455 LQVTDLSLQVTDLSLQVTDLSLQVTDLSLQVTDLSLQVAD-LSHQDRDACRLSTTTNRRW 513
Query: 340 RMVAYDTKLWTHVSLRPE 393
R Y LWT S E
Sbjct: 514 RAERY-LSLWTEASTANE 530
>SB_54663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 327
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 262 DKVLLNIFSYLTHREICRMATVCRRWRMVAYD 357
D++ I L ++ R A+VC+RWR D
Sbjct: 137 DRICYKICHKLGDSDLIRFASVCQRWRQFVED 168
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,761,825
Number of Sequences: 59808
Number of extensions: 492216
Number of successful extensions: 1352
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1350
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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