Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a04f
         (664 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.0  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   7.9  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   7.9  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   7.9  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   7.9  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 594 FRKVVELHRSTKIKKHVCQIRTFSCQLVED 505
           FRK + LH +  +++ +    TF C  V D
Sbjct: 27  FRKGLRLHDNPSLREGLAGASTFRCVFVLD 56


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 564 YCDATPRLFGNASLPDEAPLPV 629
           YC+   +L+ N +  ++ P+PV
Sbjct: 100 YCNNYKKLYYNINYIEQIPIPV 121


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 564 YCDATPRLFGNASLPDEAPLPV 629
           YC+   +L+ N +  ++ P+PV
Sbjct: 100 YCNNYKKLYYNINYIEQIPIPV 121


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 152 WIRGAF*MWTPRL 190
           W+R  F  W PRL
Sbjct: 349 WVRQVFLNWMPRL 361


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 513 VEDCVGYQLYWKL 475
           +E+C GYQ Y +L
Sbjct: 165 LENCTGYQQYLRL 177


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,001
Number of Sequences: 438
Number of extensions: 4378
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)