Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a03r
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    29   0.95 
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch...    29   0.95 
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    28   1.3  
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    26   6.7  
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    26   6.7  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    26   6.7  
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p...    26   6.7  
SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual         25   8.8  

>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +3

Query: 609 ASMPWYTWNSVKPIPPWKTR*P-WIPF 686
           A++  Y W+ V PIPP     P WIPF
Sbjct: 195 ATLNCYDWDGVNPIPPELWLLPDWIPF 221


>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 388

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 16/71 (22%), Positives = 28/71 (39%)
 Frame = -1

Query: 639 RNSRYTRACWPARGSRSQHRLSTNTVDVGK*REEHLRKHRQRTTERAISKSNGTHPDRGY 460
           R  R  +A W  +  +  + L     +    REE  RK+ +R  +RA  ++  T      
Sbjct: 298 RGQRARQAIWEKKYGKGANHLIKKATEERSIREERQRKYEERQAKRAARENAFTEHQTPQ 357

Query: 459 KAWPSRKTWSS 427
           K      +W +
Sbjct: 358 KPEQLHPSWEA 368


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 647 HPALEDPVTLDPLSLRAPPPVQEDPVYW 730
           HP L +P+ +    +  PPPV + P +W
Sbjct: 138 HPPLHNPLPVSCQPVLRPPPVPQVPSHW 165


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +3

Query: 150 PLSWRSARSYRPFSTRISSFSPPTLEP 230
           PL+  + ++++P   R+ SFS P ++P
Sbjct: 434 PLALPNKKAFQPVKFRVPSFSSPLVKP 460


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +2

Query: 314 RPLRHYFPMVPVSPYHLVLQGTHVDQARLIPLGHPEAQEDQVFLE 448
           R L  Y   V  SP    L     +  RL P+GHP A+E   F +
Sbjct: 229 RFLHPYVKFVDFSPNEKYLVSWSYEPVRLPPIGHP-ARETMPFTD 272


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 418  RVSEGNQASLVHVGTLENQVIRGDRDHREVMAQRA 314
            R  EG+ +  +++G L      GD DH   +AQ+A
Sbjct: 1313 REREGDSSFEINIGKLRCYYALGDWDHLSELAQKA 1347


>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 101

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 557 SENDVRNICESIVRERLNELSASLTAPTQTVVTK 456
           S N +  +   + R  L ELS  L  P+QT+  K
Sbjct: 21  SSNALYRVQRPLQRRPLQELSIELVKPSQTITVK 54


>SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 182

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 24/82 (29%), Positives = 35/82 (42%)
 Frame = -3

Query: 445 QEDLVFLGLRVSEGNQASLVHVGTLENQVIRGDRDHREVMAQRAIKEIGVLRE*GYPEPK 266
           + DLV+  L  +EGN ASL   G   N+   GD      M Q   K+          +P+
Sbjct: 110 ENDLVYSELEKNEGNLASLYLTG---NERYAGDERPPTSMRQAIPKDED-------RKPR 159

Query: 265 VLEELRVQLVYLGSRVGGENEE 200
            LEE+  +  +L      E E+
Sbjct: 160 TLEEMEKEAQWLKGYFSEEQEK 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,733,198
Number of Sequences: 5004
Number of extensions: 54191
Number of successful extensions: 164
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)