Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a03r
         (756 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   4.1  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   5.4  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    22   5.4  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   5.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   7.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.4  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 703 RGCAERKGIQGYRVFQGGMGLTEFQVYQGMLARPGL 596
           +G    +G+QG +  QG  G+   Q  QG+   PGL
Sbjct: 845 QGVQTAQGVQGVQGVQGVQGVQGVQGVQGV---PGL 877



 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 688 RKGIQGYRVFQGGMGLTEFQVYQGMLARPGL 596
           ++G+QG +  QG  G+   Q  QG+    G+
Sbjct: 841 QQGVQGVQTAQGVQGVQGVQGVQGVQGVQGV 871


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 603 RGSRSQHRLSTNTVDVGK*REEHLRKHRQRTTERAISK 490
           R SR ++  S          E+  RK+R+R+ ER+  K
Sbjct: 33  RTSRKRYSRSREREQNSYKNEKEYRKYRERSKERSRDK 70


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 603 RGSRSQHRLSTNTVDVGK*REEHLRKHRQRTTERAISK 490
           R SR ++  S          E+  RK+R+R+ ER+  K
Sbjct: 33  RTSRKRYSRSREREQNSYKNEKEYRKYRERSKERSRDK 70


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -1

Query: 543 EEHLRKHRQRTTERAISKSNGTHPDRGYKA 454
           E+H R+HR   + R  ++S   H +    A
Sbjct: 725 EQHFRQHRDSLSPRVENRSAIVHSEASANA 754


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 417 RRPRKTRSSWRATLCN 464
           RRP+KTR  W   + N
Sbjct: 349 RRPKKTRLRWMMEIPN 364


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 524 CFRKCSSRHFP 556
           C RKC  RH P
Sbjct: 106 CMRKCPRRHRP 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,737
Number of Sequences: 438
Number of extensions: 4172
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)