Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a03r
         (756 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ...    33   0.27 
At3g05220.2 68416.m00570 heavy-metal-associated domain-containin...    29   2.5  
At3g05220.1 68416.m00569 heavy-metal-associated domain-containin...    29   2.5  
At5g16640.1 68418.m01948 pentatricopeptide (PPR) repeat-containi...    29   3.3  
At1g15620.1 68414.m01877 expressed protein ; expression supporte...    29   4.4  
At1g53140.1 68414.m06017 dynamin family protein low similarity t...    28   5.8  

>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
           protein 
          Length = 987

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -1

Query: 597 SRSQHRLS-TNTVDVGK*REEHLRKHRQRTTERAISKSNGTH 475
           SRS+ R   + T D  +  +E  +KHRQR+  R++   NG+H
Sbjct: 684 SRSRSREDRSKTRDTSRNSDEAKQKHRQRSRSRSLENDNGSH 725


>At3g05220.2 68416.m00570 heavy-metal-associated domain-containing
           protein similar to farnesylated protein 1 (GI:23304411)
           {Hordeum vulgare subsp. spontaneum}; contains Pfam
           profile PF00403: Heavy-metal-associated domain
          Length = 478

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = -2

Query: 353 GRPGPSGSNGAKGDKGDRGVEGVGLP-GTEGPRGAPGPV 240
           G  GP G  G  G  G  G+ G G P    GP G  GP+
Sbjct: 328 GPGGPMGPGGPMGQGGPMGMMGPGGPMSMMGPGGPMGPM 366


>At3g05220.1 68416.m00569 heavy-metal-associated domain-containing
           protein similar to farnesylated protein 1 (GI:23304411)
           {Hordeum vulgare subsp. spontaneum}; contains Pfam
           profile PF00403: Heavy-metal-associated domain
          Length = 577

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = -2

Query: 353 GRPGPSGSNGAKGDKGDRGVEGVGLP-GTEGPRGAPGPV 240
           G  GP G  G  G  G  G+ G G P    GP G  GP+
Sbjct: 427 GPGGPMGPGGPMGQGGPMGMMGPGGPMSMMGPGGPMGPM 465


>At5g16640.1 68418.m01948 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 504

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 436 LVFLGLRVSEGNQASLVHVGTLENQVIRGDR 344
           L FLG  +  G++ S+V  G+L N   RGDR
Sbjct: 136 LSFLGKMIKLGHEPSIVTFGSLLNGFCRGDR 166


>At1g15620.1 68414.m01877 expressed protein ; expression supported
           by MPSS
          Length = 343

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 96  FDESLWVAVVGYGTITN-PPLSWRSARSYRPFS 191
           + E+ W+ V  YG+I N P L WR  +   P S
Sbjct: 228 YPEATWILVYAYGSIANLPILCWRFWQIRHPVS 260


>At1g53140.1 68414.m06017 dynamin family protein low similarity to
           dynamin-like protein E [Arabidopsis thaliana]
           GI:19423872; contains Pfam profile PF00350: Dynamin
           family
          Length = 817

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +1

Query: 463 TTVWVGAVRLADSSFSRSLTMLSQM--FLTSFSD 558
           +++W+ AVR  DSSF R++ ++S+    L  FSD
Sbjct: 222 SSLWLDAVREIDSSFRRTIVVVSKFDNRLKEFSD 255


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,861,338
Number of Sequences: 28952
Number of extensions: 308567
Number of successful extensions: 1049
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)