Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10a03f
(637 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT003497-1|AAO39501.1| 254|Drosophila melanogaster RE46560p pro... 29 4.0
AE014297-4555|AAF57017.2| 254|Drosophila melanogaster CG1983-PA... 29 4.0
AY084149-1|AAL89887.1| 499|Drosophila melanogaster RE29709p pro... 28 9.2
AY061327-1|AAL28875.1| 719|Drosophila melanogaster LD24749p pro... 28 9.2
AJ243916-1|CAB51032.1| 719|Drosophila melanogaster DOMINA prote... 28 9.2
AJ243814-1|CAB51073.1| 719|Drosophila melanogaster DOMINA prote... 28 9.2
AF289996-1|AAG02461.1| 1475|Drosophila melanogaster thyroid horm... 28 9.2
AF264033-1|AAF91395.1| 719|Drosophila melanogaster winged-helix... 28 9.2
AE014297-2719|AAF55707.2| 1362|Drosophila melanogaster CG4562-PA... 28 9.2
AE014297-1143|AAF54525.1| 719|Drosophila melanogaster CG4029-PA... 28 9.2
AE014296-3591|AAF51757.2| 1475|Drosophila melanogaster CG7162-PA... 28 9.2
AE013599-2536|AAF57813.3| 499|Drosophila melanogaster CG14485-P... 28 9.2
AE013599-852|AAF58947.2| 1290|Drosophila melanogaster CG8799-PA ... 28 9.2
AB028890-1|BAA94598.1| 719|Drosophila melanogaster Winged-helix... 28 9.2
>BT003497-1|AAO39501.1| 254|Drosophila melanogaster RE46560p
protein.
Length = 254
Score = 29.5 bits (63), Expect = 4.0
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +3
Query: 114 FSYSNGQADNFTTMAPFARSFCSPNSKDSDFQTVALIAVYRLDRSDTTGVTLVQ 275
F YSNG +F ++ RS C +S D V++ D++ G T+V+
Sbjct: 188 FDYSNGPNPDFVSLMQVHRSICEAHSLAPDSVLVSMGMSNDFDKAIEMGSTVVR 241
>AE014297-4555|AAF57017.2| 254|Drosophila melanogaster CG1983-PA
protein.
Length = 254
Score = 29.5 bits (63), Expect = 4.0
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +3
Query: 114 FSYSNGQADNFTTMAPFARSFCSPNSKDSDFQTVALIAVYRLDRSDTTGVTLVQ 275
F YSNG +F ++ RS C +S D V++ D++ G T+V+
Sbjct: 188 FDYSNGPNPDFVSLMQVHRSICEAHSLAPDSVLVSMGMSNDFDKAIEMGSTVVR 241
>AY084149-1|AAL89887.1| 499|Drosophila melanogaster RE29709p
protein.
Length = 499
Score = 28.3 bits (60), Expect = 9.2
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +2
Query: 335 SKRSVPGWSSEPVQCGGNLQCSRTTK 412
S RS GWSS P GGN CSR+ +
Sbjct: 56 SGRSCFGWSSAPEAAGGN--CSRSNR 79
>AY061327-1|AAL28875.1| 719|Drosophila melanogaster LD24749p
protein.
Length = 719
Score = 28.3 bits (60), Expect = 9.2
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -1
Query: 499 TRTATFLGSGIKMRENSTLFERARRRL-HGLRCPRALKVPSTLNRFGRPPGNTSFRGKV 326
T AT + + R NS+ + R+ L LR ++ VP++L G+ G+T V
Sbjct: 214 TAPATMATNSVLQRRNSSAVDAVRKDLVTELRKAQSSPVPNSLEELGKGKGSTLLNASV 272
>AJ243916-1|CAB51032.1| 719|Drosophila melanogaster DOMINA protein
(WHN-homologue) protein.
Length = 719
Score = 28.3 bits (60), Expect = 9.2
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -1
Query: 499 TRTATFLGSGIKMRENSTLFERARRRL-HGLRCPRALKVPSTLNRFGRPPGNTSFRGKV 326
T AT + + R NS+ + R+ L LR ++ VP++L G+ G+T V
Sbjct: 214 TAPATMATNSVLQRRNSSAVDAVRKDLVTELRKAQSSPVPNSLEELGKGKGSTLLNASV 272
>AJ243814-1|CAB51073.1| 719|Drosophila melanogaster DOMINA protein
protein.
Length = 719
Score = 28.3 bits (60), Expect = 9.2
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -1
Query: 499 TRTATFLGSGIKMRENSTLFERARRRL-HGLRCPRALKVPSTLNRFGRPPGNTSFRGKV 326
T AT + + R NS+ + R+ L LR ++ VP++L G+ G+T V
Sbjct: 214 TAPATMATNSVLQRRNSSAVDAVRKDLVTELRKAQSSPVPNSLEELGKGKGSTLLNASV 272
>AF289996-1|AAG02461.1| 1475|Drosophila melanogaster thyroid hormone
receptor-associatedprotein TRAP220 protein.
Length = 1475
Score = 28.3 bits (60), Expect = 9.2
Identities = 14/24 (58%), Positives = 14/24 (58%)
Frame = +2
Query: 311 RGS*SNFTSKRSVPGWSSEPVQCG 382
RGS N TS RS P SSEP G
Sbjct: 1392 RGSGGNTTSGRSTPSGSSEPALAG 1415
>AF264033-1|AAF91395.1| 719|Drosophila melanogaster winged-helix
protein jumeaux protein.
Length = 719
Score = 28.3 bits (60), Expect = 9.2
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -1
Query: 499 TRTATFLGSGIKMRENSTLFERARRRL-HGLRCPRALKVPSTLNRFGRPPGNTSFRGKV 326
T AT + + R NS+ + R+ L LR ++ VP++L G+ G+T V
Sbjct: 214 TAPATMATNSVLQRRNSSAVDAVRKDLVTELRKAQSSPVPNSLEELGKGKGSTLLNASV 272
>AE014297-2719|AAF55707.2| 1362|Drosophila melanogaster CG4562-PA
protein.
Length = 1362
Score = 28.3 bits (60), Expect = 9.2
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Frame = +3
Query: 351 PGGLPNRFSVEGTFNARGQRRPWSLLRA--RSNNVLF--SLILMPEPRKVAVLVQGSRAV 518
P GL ++ S GT + GQR+ L RA R N +L +P+ A++ R
Sbjct: 1200 PSGLQSKISEGGTNFSVGQRQLVCLARAILRENRILVMDEATANVDPQTDALIQTTIRNK 1259
Query: 519 FKSPELFTTGWHKLHVAVANRSV 587
FK + T H+LH + + V
Sbjct: 1260 FKDCTVLTIA-HRLHTVMDSDKV 1281
>AE014297-1143|AAF54525.1| 719|Drosophila melanogaster CG4029-PA
protein.
Length = 719
Score = 28.3 bits (60), Expect = 9.2
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -1
Query: 499 TRTATFLGSGIKMRENSTLFERARRRL-HGLRCPRALKVPSTLNRFGRPPGNTSFRGKV 326
T AT + + R NS+ + R+ L LR ++ VP++L G+ G+T V
Sbjct: 214 TAPATMATNSVLQRRNSSAVDAVRKDLVTELRKAQSSPVPNSLEELGKGKGSTLLNASV 272
>AE014296-3591|AAF51757.2| 1475|Drosophila melanogaster CG7162-PA
protein.
Length = 1475
Score = 28.3 bits (60), Expect = 9.2
Identities = 14/24 (58%), Positives = 14/24 (58%)
Frame = +2
Query: 311 RGS*SNFTSKRSVPGWSSEPVQCG 382
RGS N TS RS P SSEP G
Sbjct: 1392 RGSGGNTTSGRSTPSGSSEPALAG 1415
>AE013599-2536|AAF57813.3| 499|Drosophila melanogaster CG14485-PA
protein.
Length = 499
Score = 28.3 bits (60), Expect = 9.2
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +2
Query: 335 SKRSVPGWSSEPVQCGGNLQCSRTTK 412
S RS GWSS P GGN CSR+ +
Sbjct: 56 SGRSCFGWSSAPEAAGGN--CSRSNR 79
>AE013599-852|AAF58947.2| 1290|Drosophila melanogaster CG8799-PA
protein.
Length = 1290
Score = 28.3 bits (60), Expect = 9.2
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Frame = +3
Query: 336 LKEV---FPGGLPNRFSVEGTFNARGQRRPWSLLRA--RSNNVLF--SLILMPEPRKVAV 494
LKEV P GL ++ S GT + GQR+ L RA R N +L +P+ +
Sbjct: 1150 LKEVVSDLPDGLASKISEGGTNFSVGQRQLVCLARAILRENRILVMDEATANVDPQTDGL 1209
Query: 495 LVQGSRAVFKSPELFTTGWHKLHVAVANRSVHI 593
+ R+ F+ + T H+LH + + V +
Sbjct: 1210 IQATIRSKFRDCTVLTIA-HRLHTIIDSDKVMV 1241
>AB028890-1|BAA94598.1| 719|Drosophila melanogaster Winged-helix
nude transcriptionfactor protein.
Length = 719
Score = 28.3 bits (60), Expect = 9.2
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -1
Query: 499 TRTATFLGSGIKMRENSTLFERARRRL-HGLRCPRALKVPSTLNRFGRPPGNTSFRGKV 326
T AT + + R NS+ + R+ L LR ++ VP++L G+ G+T V
Sbjct: 214 TAPATMATNSVLQRRNSSAVDAVRKDLVTELRKAQSSPVPNSLEELGKGKGSTLLNASV 272
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,429,569
Number of Sequences: 53049
Number of extensions: 614813
Number of successful extensions: 1946
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1946
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2662347150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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