Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a03f
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    23   3.3  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   4.3  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   5.7  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   5.7  

>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 191 RIWRAKGSRERSHCREIICLPVAV 120
           ++WR  G+     C  II +PV +
Sbjct: 1   KLWRMTGTWVGGFCHSIIQIPVII 24


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 605 TIDCYMNRSIRDSHV*FV 552
           ++DCY  +S RDS + F+
Sbjct: 84  SMDCYFRQSWRDSRLSFL 101


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
            protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = +3

Query: 258  GVTLVQGSQDLQMAYRIGGGANLTLPLKEVFPGGLPNRFSVEGTFNARGQRRPWS 422
            GV  VQG Q +Q    + G   L   +++VF  G+       G    +   + WS
Sbjct: 855  GVQGVQGVQGVQGVQGVQGVPGLLQGVQQVFGQGVQGMNVPYGMQRGQSGGQTWS 909


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 571 TATCSLCHPVVNNSGLLN 518
           +A C+LCH V      LN
Sbjct: 401 SAVCALCHKVFRTLNSLN 418


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,716
Number of Sequences: 438
Number of extensions: 3860
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)