Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a03f
         (637 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33420.1 68414.m04137 PHD finger family protein contains Pfam...    30   1.1  
At5g14540.1 68418.m01704 proline-rich family protein contains pr...    29   2.0  
At5g54620.1 68418.m06801 ankyrin repeat family protein contains ...    29   3.4  
At5g59300.1 68418.m07430 ubiquitin-conjugating enzyme 7 (UBC7) E...    28   4.5  
At5g54050.1 68418.m06722 DC1 domain-containing protein                 28   4.5  
At4g05450.1 68417.m00827 adrenodoxin-like ferredoxin 2 similar t...    28   4.5  
At3g46460.1 68416.m05037 ubiquitin-conjugating enzyme 13 (UBC13)...    28   4.5  
At4g17680.1 68417.m02641 expressed protein                             28   6.0  
At2g43850.2 68415.m05452 ankyrin protein kinase, putative (APK1)...    28   6.0  
At2g43850.1 68415.m05451 ankyrin protein kinase, putative (APK1)...    28   6.0  
At4g10400.1 68417.m01707 F-box family protein contains F-box dom...    27   7.9  
At3g55380.1 68416.m06151 ubiquitin-conjugating enzyme 14 (UBC14)...    27   7.9  
At3g07160.1 68416.m00853 glycosyl transferase family 48 protein ...    27   7.9  
At2g17060.1 68415.m01970 disease resistance protein (TIR-NBS-LRR...    27   7.9  

>At1g33420.1 68414.m04137 PHD finger family protein contains Pfam
           profile: PF00628: PHD-finger
          Length = 697

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 171 SFCSPNSKDSDFQTVALIAVYRLDRSDTTGVTLVQGSQDLQMAY 302
           S C+P S D +++  ++  V+RL   D    ++    QDL+  Y
Sbjct: 409 SRCNPGSNDFEYRLESVNNVHRLSNQDVNNASVEHVKQDLRYLY 452


>At5g14540.1 68418.m01704 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 547

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +3

Query: 309 GGGANLTLPLKEVFPGGLPNRFSVEGTFNARGQRRPWSLLRARSNNVLFSLILMPEPR 482
           G GA   LP+    P GLP   ++    +  G   P S  RA  ++V+  ++ M  PR
Sbjct: 440 GSGAYPQLPMARPLPQGLPMASAISSGGSGGGSDSPRSGNRAPVDDVIDKVVSMGFPR 497


>At5g54620.1 68418.m06801 ankyrin repeat family protein contains
           Pfam domain, PF00023: Ankyrin repeat
          Length = 431

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 531 ELFTTGWHKLHVAVANRSVHIAVDCVELNP 620
           +L + G   LH+AV N  V +A++ V++NP
Sbjct: 66  KLNSDGVSPLHLAVENHQVQLALELVKINP 95


>At5g59300.1 68418.m07430 ubiquitin-conjugating enzyme 7 (UBC7) E2;
           identical to gi:992703, SP:P42747
          Length = 198

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 303 YTPFEDPGTPELGSHRWCPIYPVD 232
           + P +DP   EL S RW P++ V+
Sbjct: 126 HPPGDDPSGYELASERWTPVHTVE 149


>At5g54050.1 68418.m06722 DC1 domain-containing protein 
          Length = 580

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
 Frame = -1

Query: 562 CSLC---HPV---VNNSGLLNTALEPWTRTATFLGSGIKMREN 452
           CSLC   H +   V  SG+    +EPW RT+ + G  +++  N
Sbjct: 31  CSLCSHYHSLSWQVFRSGVWQNEVEPWFRTSEYHGPALRISNN 73


>At4g05450.1 68417.m00827 adrenodoxin-like ferredoxin 2 similar to
           SP|P46656 Adrenodoxin, mitochondrial precursor (Adrenal
           ferredoxin) from Mus musculus, SP|P10109 Adrenodoxin,
           mitochondrial precursor (Hepatoredoxin) from Homo
           sapiens, SP|P29330 Adrenodoxin from Ovis aries; contains
           Pfam profile: PF00111 2Fe-2S iron-sulfur cluster binding
           domains; identical to cDNA GI: 28192430
          Length = 197

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
 Frame = -1

Query: 574 ATATCSLCHPVVNNSGLLNTALEPWTRTATFLGSGIKMRENSTLFER--ARRRLHGLRCP 401
           A+  CS CH +V ++   N   EP       L     + E S L  +  AR  L G+R  
Sbjct: 120 ASLACSTCHVIVMDTEYYNKLEEPTDEENDMLDLAFGLTETSRLGCQVIARPELDGVR-- 177

Query: 400 RALKVPSTLNRF 365
             L +PS    F
Sbjct: 178 --LAIPSATRNF 187


>At3g46460.1 68416.m05037 ubiquitin-conjugating enzyme 13 (UBC13)
           E2; identical to gi:992706
          Length = 166

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 303 YTPFEDPGTPELGSHRWCPIYPVD 232
           + P +DP   EL S RW P++ V+
Sbjct: 94  HPPGDDPSGYELASERWTPVHTVE 117


>At4g17680.1 68417.m02641 expressed protein
          Length = 314

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 429 RARSNNVLFSLILMPEPRKVAVLVQGSRAVFKSPELFTTGWHKLH 563
           R RS  V  S ++ P P K + ++  +  + K+P + +TG    H
Sbjct: 61  RKRSREVYSSALMNPPPPKPSQVIDITELLQKTPNVVSTGLRLFH 105


>At2g43850.2 68415.m05452 ankyrin protein kinase, putative (APK1)
           similar to ankyrin-kinase [Medicago truncatula]
           gi|18700701|gb|AAL78674;contains Pfam profile PF00069:
           Protein kinase domain; contains Pfam profile PF00023:
           Ankyrin repeat
          Length = 479

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = -1

Query: 340 FRGKVRLAPPPILYAI*RSWDP*TRVTPVVSDLSSRYTAIRATV----WKSESFEF 185
           F+ K R  PP I   I + W P   + P  S++  R   I A      W  ++F+F
Sbjct: 421 FKTKSRSYPPDIKELIEKCWHPEAGIRPTFSEIIIRLDKIVANCSKQGWWKDTFKF 476


>At2g43850.1 68415.m05451 ankyrin protein kinase, putative (APK1)
           similar to ankyrin-kinase [Medicago truncatula]
           gi|18700701|gb|AAL78674;contains Pfam profile PF00069:
           Protein kinase domain; contains Pfam profile PF00023:
           Ankyrin repeat
          Length = 479

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = -1

Query: 340 FRGKVRLAPPPILYAI*RSWDP*TRVTPVVSDLSSRYTAIRATV----WKSESFEF 185
           F+ K R  PP I   I + W P   + P  S++  R   I A      W  ++F+F
Sbjct: 421 FKTKSRSYPPDIKELIEKCWHPEAGIRPTFSEIIIRLDKIVANCSKQGWWKDTFKF 476


>At4g10400.1 68417.m01707 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 409

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +3

Query: 171 SFCSPNSKDSDFQTVALIAVYRLDRSDTTGVTLVQGSQDLQMAY 302
           S  +P+S++    T +L++   +DR+D +   L++    L+ AY
Sbjct: 206 SLSTPSSREFVIDTPSLLSFQLVDRNDNSHTFLIENMPKLREAY 249


>At3g55380.1 68416.m06151 ubiquitin-conjugating enzyme 14 (UBC14)
           E2; UbcAT3; identical to gi:2129757, S46656
          Length = 167

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 303 YTPFEDPGTPELGSHRWCPIYPVD 232
           + P +DP   EL S RW P++ V+
Sbjct: 95  HPPGDDPHGYELASERWTPVHTVE 118


>At3g07160.1 68416.m00853 glycosyl transferase family 48 protein
            similar to glucan synthase GB:AAD11794 [Filobasidiella
            neoformans var. neoformans]
          Length = 1931

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 387  TFNARGQRRPWSLL-RARSNNVLFSLILMPEPRKVAVLVQGSRAVF 521
            TFN RG    W+LL +A +   LF+ +  P+  ++  LV+   ++F
Sbjct: 1010 TFNMRGHYETWNLLTQAWNEGRLFTKLKWPKDPELKALVKRLYSLF 1055


>At2g17060.1 68415.m01970 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1195

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 105 SILFSYSNGQADNFTTMAPFARSFCSPNSKDSDF 206
           ++L S S+G+ +    MA FA+  CS  S ++++
Sbjct: 507 NLLISISSGRLEMHDLMATFAKKLCSSLSNENNY 540


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,057,040
Number of Sequences: 28952
Number of extensions: 288338
Number of successful extensions: 728
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)