Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10a02r
(751 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15319| Best HMM Match : Transposase_9 (HMM E-Value=3.2) 32 0.57
SB_49488| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_36107| Best HMM Match : zf-CCHC (HMM E-Value=0.00023) 30 2.3
SB_24180| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_13174| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_49747| Best HMM Match : RVT_1 (HMM E-Value=2.1e-36) 30 2.3
SB_46950| Best HMM Match : zf-CCHC (HMM E-Value=0.0015) 30 2.3
SB_45147| Best HMM Match : zf-CCHC (HMM E-Value=0.0051) 30 2.3
SB_32803| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_23788| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38) 30 2.3
SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34) 30 2.3
SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14) 30 2.3
SB_44616| Best HMM Match : rve (HMM E-Value=0.012) 29 3.0
SB_19217| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_24050| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_20046| Best HMM Match : UPAR_LY6 (HMM E-Value=3.2) 29 4.0
SB_47225| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_56854| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_47005| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_24712| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_20652| Best HMM Match : OmpH (HMM E-Value=1.9) 28 9.3
SB_12593| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_50077| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_2018| Best HMM Match : AIRC (HMM E-Value=5.1) 28 9.3
>SB_15319| Best HMM Match : Transposase_9 (HMM E-Value=3.2)
Length = 782
Score = 31.9 bits (69), Expect = 0.57
Identities = 24/94 (25%), Positives = 40/94 (42%)
Frame = -3
Query: 350 RLMLPRGTEGGFPFQLFVFVYPFDNKGKDLAPFESFVLDNKPLGFPLDRPVVDALFKVPN 171
R L + G +P QL + V PF KG P++ + + F + R N
Sbjct: 333 RRWLSEPSYGYWPQQLNLAVCPFTQKGN---PYKKAAFERLCIEFGMSRKPDFRWKGGRN 389
Query: 170 MYFKDIFIYHEGERFPYKFNIPSYDTQSNVVPKN 69
D+F+++ GE + I YDT ++ P +
Sbjct: 390 HGLGDVFVFYPGEGYRNVHVIRGYDTAADEYPSH 423
>SB_49488| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1228
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
Frame = -3
Query: 746 DASXSVYFSKEEIKNNHVHDVKVRQPRLNHSPFNVNIEVDSNVASDAVVKIFLAPKYDDN 567
D SV + + ++++ ++ + I V V S + I Y +
Sbjct: 275 DTGSSVSIIPRNVYESTCKHLELKPAKVKLRTYGSEIIVPMGVVSARTLVITTNAMYVVD 334
Query: 566 GIPLTLED-NWMKFFELDWFTTKLTAGQNKIIRNSNE 459
G + L +W++ F+L+W + KL G+N + + E
Sbjct: 335 GPRVALFGRSWLRLFKLEWPSIKLVQGKNTALSDLTE 371
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
Frame = -3
Query: 746 DASXSVYFSKEEIKNNHVHDVKVRQPRLNHSPFNVNIEVDSNVASDAVVKIFLAPKYDDN 567
D SV + + ++++ ++ + I V V S + I Y +
Sbjct: 758 DTGSSVSIIPRNVYESTCKHLELKPAKVKLRTYGSEIIVPMGVVSARTLVITTNAMYVVD 817
Query: 566 GIPLTLED-NWMKFFELDWFTTKLTAGQNKIIRNSNE 459
G + L +W++ F+L+W + KL G+N + + E
Sbjct: 818 GPRVALFGRSWLRLFKLEWPSIKLVQGKNTALSDLTE 854
>SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 918
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 542 NWMKFFELDWFTTKLTAGQNKIIRNSNE 459
+W++ F+LDW + KL G+N + + E
Sbjct: 219 SWLRLFKLDWPSMKLVEGKNTALSDLTE 246
>SB_36107| Best HMM Match : zf-CCHC (HMM E-Value=0.00023)
Length = 425
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 542 NWMKFFELDWFTTKLTAGQNKIIRNSNE 459
+W++ F+LDW + KL G+N + + E
Sbjct: 377 SWLRLFKLDWPSIKLVQGKNTALSDLTE 404
>SB_24180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 238
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 542 NWMKFFELDWFTTKLTAGQNKIIRNSNE 459
+W++ F+LDW + KL G+N + + E
Sbjct: 76 SWLRLFKLDWPSIKLVQGKNTALSDLTE 103
>SB_13174| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1108
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/73 (26%), Positives = 31/73 (42%)
Frame = -3
Query: 287 PFDNKGKDLAPFESFVLDNKPLGFPLDRPVVDALFKVPNMYFKDIFIYHEGERFPYKFNI 108
PF KG P++ + + F L R N D+F+++ GE + I
Sbjct: 155 PFTQKGN---PYKKAAFERLCIEFGLPRKPDFRWKGGRNHGLDDVFVFYPGEGYRNMHVI 211
Query: 107 PSYDTQSNVVPKN 69
P YDT ++ P +
Sbjct: 212 PGYDTAADEYPSH 224
>SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2309
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 542 NWMKFFELDWFTTKLTAGQNKIIRNSNE 459
+W++ F+LDW + KL G+N + + E
Sbjct: 293 SWLRLFKLDWPSIKLVQGKNTALSDLTE 320
>SB_49747| Best HMM Match : RVT_1 (HMM E-Value=2.1e-36)
Length = 877
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 542 NWMKFFELDWFTTKLTAGQNKIIRNSNE 459
+W++ F+LDW + KL G+N + + E
Sbjct: 76 SWLRLFKLDWPSIKLVQGKNTALSDLTE 103
>SB_46950| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)
Length = 797
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 542 NWMKFFELDWFTTKLTAGQNKIIRNSNE 459
+W++ F+LDW + KL G+N + + E
Sbjct: 287 SWLRLFKLDWPSIKLVQGKNTALSDLTE 314
>SB_45147| Best HMM Match : zf-CCHC (HMM E-Value=0.0051)
Length = 522
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 542 NWMKFFELDWFTTKLTAGQNKIIRNSNE 459
+W++ F+LDW + KL G+N + + E
Sbjct: 164 SWLRLFKLDWPSIKLVQGKNTALSDLTE 191
>SB_32803| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 542 NWMKFFELDWFTTKLTAGQNKIIRNSNE 459
+W++ F+LDW + KL G+N + + E
Sbjct: 15 SWLRLFKLDWPSIKLVQGKNTALSDLTE 42
>SB_23788| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)
Length = 1122
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 542 NWMKFFELDWFTTKLTAGQNKIIRNSNE 459
+W++ F+LDW + KL G+N + + E
Sbjct: 399 SWLRLFKLDWPSIKLVQGKNTALSDLTE 426
>SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1696
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 542 NWMKFFELDWFTTKLTAGQNKIIRNSNE 459
+W++ F+LDW + KL G+N + + E
Sbjct: 467 SWLRLFKLDWPSIKLVQGKNTALSDLTE 494
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 542 NWMKFFELDWFTTKLTAGQNKIIRNSNE 459
+W++ F+LDW + KL G+N + + E
Sbjct: 1117 SWLRLFKLDWPSIKLVQGKNTALSDLTE 1144
>SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34)
Length = 837
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 542 NWMKFFELDWFTTKLTAGQNKIIRNSNE 459
+W++ F+LDW + KL G+N + + E
Sbjct: 143 SWLRLFKLDWPSMKLVEGKNTALSDLTE 170
>SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)
Length = 1217
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 542 NWMKFFELDWFTTKLTAGQNKIIRNSNE 459
+W++ F+LDW + KL G+N + + E
Sbjct: 176 SWLRLFKLDWPSIKLVQGKNTALSDLTE 203
>SB_44616| Best HMM Match : rve (HMM E-Value=0.012)
Length = 1189
Score = 29.5 bits (63), Expect = 3.0
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = -3
Query: 323 GGFPFQLFVFVYPFDNKGKDLAPFESFVLDNKPLGFPLDRPVVDALFKVPNMYFK-DIFI 147
G +P QL V PF KG P++ + + F L R D +K + D+F+
Sbjct: 376 GYWPQQLNFAVCPFTQKGN---PYKKAAFERLCIEFSLPRKP-DFRWKGGRNHGPGDVFV 431
Query: 146 YHEGERFPYKFNIPSYDTQSNVVPKN 69
++ GE + I YDT ++ P +
Sbjct: 432 FYPGEGYRNVHVILGYDTAADEYPSH 457
>SB_19217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 468
Score = 29.5 bits (63), Expect = 3.0
Identities = 24/85 (28%), Positives = 36/85 (42%)
Frame = -3
Query: 323 GGFPFQLFVFVYPFDNKGKDLAPFESFVLDNKPLGFPLDRPVVDALFKVPNMYFKDIFIY 144
G +P QL V PF KG P++ V + + F L R N D+F++
Sbjct: 238 GYWPQQLNFAVCPFTQKGN---PYKKAVFERLCIEFGLPRNPDFRWKGGRNHGLGDVFVF 294
Query: 143 HEGERFPYKFNIPSYDTQSNVVPKN 69
+ GE I YDT ++ P +
Sbjct: 295 YPGEGNRNVHVIRGYDTAADEYPSH 319
>SB_24050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1092
Score = 29.1 bits (62), Expect = 4.0
Identities = 20/73 (27%), Positives = 31/73 (42%)
Frame = -3
Query: 287 PFDNKGKDLAPFESFVLDNKPLGFPLDRPVVDALFKVPNMYFKDIFIYHEGERFPYKFNI 108
PF KGK P++ + + F L R L N D+F+++ GE + I
Sbjct: 203 PFTQKGK---PYKKAAFERLCIEFGLPRKPDFRLKGGRNHGLGDVFVFYPGEGYRNVHVI 259
Query: 107 PSYDTQSNVVPKN 69
YDT + P +
Sbjct: 260 RGYDTAMDEYPSH 272
>SB_20046| Best HMM Match : UPAR_LY6 (HMM E-Value=3.2)
Length = 419
Score = 29.1 bits (62), Expect = 4.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 542 NWMKFFELDWFTTKLTAGQNKIIRNSNE 459
+W++ F+LDW + KL G+N + + E
Sbjct: 349 SWLRLFKLDWPSIKLVQGKNIALSDLTE 376
>SB_47225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/73 (26%), Positives = 31/73 (42%)
Frame = -3
Query: 287 PFDNKGKDLAPFESFVLDNKPLGFPLDRPVVDALFKVPNMYFKDIFIYHEGERFPYKFNI 108
PF KG P++ + + F L R N D+F+++ GER+ I
Sbjct: 186 PFTQKGN---PYKKAAFERLCIEFGLPRKPDFRWKGGRNHGLGDVFVFYPGERYRNVHVI 242
Query: 107 PSYDTQSNVVPKN 69
YDT ++ P +
Sbjct: 243 RGYDTAADEYPSH 255
>SB_56854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -1
Query: 208 IAPLLMHYSRFLTCISRIFSFTTRVNGSLTNSIFLRMTHS 89
I PL+ L C+S + T ++GSL++ + ++TH+
Sbjct: 45 ILPLVPRPKELLECVSNMRLLTWLLHGSLSHMVHSKITHA 84
>SB_47005| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 289
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/73 (26%), Positives = 31/73 (42%)
Frame = -3
Query: 287 PFDNKGKDLAPFESFVLDNKPLGFPLDRPVVDALFKVPNMYFKDIFIYHEGERFPYKFNI 108
PF KG P++ + + F L R V N D+F+++ GE + I
Sbjct: 177 PFTQKGN---PYKKAAFERLCIEFGLPRKQVFRWKGGRNHGLGDVFVFYPGEGYCNVHVI 233
Query: 107 PSYDTQSNVVPKN 69
YDT ++ P +
Sbjct: 234 RGYDTAADEYPSH 246
>SB_24712| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 468
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/73 (26%), Positives = 32/73 (43%)
Frame = -3
Query: 287 PFDNKGKDLAPFESFVLDNKPLGFPLDRPVVDALFKVPNMYFKDIFIYHEGERFPYKFNI 108
PF KG P++ + + F L R + N D+F+++ GE + I
Sbjct: 179 PFTQKGN---PYKKAAFERLCIEFGLPRKLDFRWKGGRNHGLGDVFVFYPGEGYRNVHVI 235
Query: 107 PSYDTQSNVVPKN 69
SYDT ++ P +
Sbjct: 236 CSYDTAADEYPSH 248
>SB_20652| Best HMM Match : OmpH (HMM E-Value=1.9)
Length = 842
Score = 27.9 bits (59), Expect = 9.3
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Frame = -3
Query: 287 PFDNKGKDL--APFESFVLD-NKPLGFPLDRPVVDALFKVPNMYFKDIFIYHEGERFPYK 117
PF KG A FE ++ P G P++R N D+F+++ GER
Sbjct: 132 PFTQKGNPYKKAAFERLCIEFGLPPGLPMERR--------RNHGLGDVFVFYPGERCRNV 183
Query: 116 FNIPSYDTQSNVVPKN 69
I YDT ++ P +
Sbjct: 184 HVIRGYDTAADKYPSH 199
>SB_12593| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 431
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -3
Query: 158 DIFIYHEGERFPYKFNIPSYDTQSNVVPKN 69
D+F+++ GE + IP YDT ++ P +
Sbjct: 259 DVFVFYPGEGYRNVHVIPGYDTAADEYPSH 288
>SB_50077| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 907
Score = 27.9 bits (59), Expect = 9.3
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Frame = -3
Query: 287 PFDNKGKDL--APFESFVLD-NKPLGFPLDRPVVDALFKVPNMYFKDIFIYHEGERFPYK 117
PF KG A FE ++ P G P++R L D+F+++ GE +
Sbjct: 128 PFTQKGNPYKKAAFERLCIEFGLPPGLPMERRAEHGL--------GDVFVFYPGEGYRNV 179
Query: 116 FNIPSYDTQSNVVPKN 69
I YDT ++ P +
Sbjct: 180 HVIRGYDTAADEYPSH 195
>SB_2018| Best HMM Match : AIRC (HMM E-Value=5.1)
Length = 298
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -3
Query: 158 DIFIYHEGERFPYKFNIPSYDTQSNVVPKN 69
D+F+++ GE + IP YDT ++ P +
Sbjct: 253 DVFVFYPGEGYRNVHVIPGYDTAADEYPSH 282
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,926,668
Number of Sequences: 59808
Number of extensions: 504171
Number of successful extensions: 1452
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1450
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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