Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a02f
         (602 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1025 - 10506144-10506226,10506643-10506699,10507502-105076...    32   0.40 
11_01_0419 + 3226224-3226756,3228010-3228169,3228256-3228435,322...    29   2.1  
01_06_0006 - 25517892-25517935,25518156-25518276,25518598-255187...    29   2.1  
06_02_0019 - 10656005-10657511,10657712-10658739                       29   2.8  
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624...    29   3.7  
10_08_0188 - 15596062-15597084,15597513-15597791                       27   8.7  
03_02_0882 - 12121917-12124446,12124739-12124919,12125057-121251...    27   8.7  

>12_01_1025 -
           10506144-10506226,10506643-10506699,10507502-10507605,
           10507884-10507937,10508107-10508193,10509027-10509214,
           10509793-10509854,10510084-10510354,10510756-10510834,
           10511715-10511913,10512816-10512960,10513324-10513416,
           10514449-10514736
          Length = 569

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 390 ETFYKTACFARVHLNQGQFLYAF-YIAVIQRSDCHGF 497
           ETF+ TAC  R HL QG+ + A+ Y+   +  DC GF
Sbjct: 427 ETFFTTACMGRGHLCQGKLVDAYRYLHKEKDMDC-GF 462


>11_01_0419 +
           3226224-3226756,3228010-3228169,3228256-3228435,
           3228525-3228659,3229262-3229344,3229442-3229535,
           3229649-3229735
          Length = 423

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -1

Query: 542 IHKHFRVYFIRSRNNETVAIRALDNSDVEGIQELTLIEMHT 420
           IHK FR++  R  + E +AIRA  NS +     L L +M T
Sbjct: 319 IHKPFRIHLGRGLHGECLAIRADGNSKLSHEIGLELSKMST 359


>01_06_0006 -
           25517892-25517935,25518156-25518276,25518598-25518733,
           25519189-25519280,25519358-25519426,25519710-25519821,
           25519897-25520015,25520302-25520355,25520811-25520891,
           25520968-25521051,25521124-25521315,25521633-25521746,
           25521832-25521978,25522066-25522302,25522762-25522810,
           25522894-25523027,25523124-25523324,25523532-25523701,
           25523773-25523875,25524198-25524361,25525015-25525055,
           25525144-25525187
          Length = 835

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
 Frame = +3

Query: 114 VDAVFVEKQKKILSFFQDVSQLNTDDEYYK-------IGKDYDIEMNMDNYTNKKAVEEF 272
           VD V+   Q+K +  ++ ++    ++  Y+       I K    E +   Y NK   +EF
Sbjct: 651 VDRVYRIGQEKNVIIYRLITSCTIEERIYEKQVSKEGIFKAATEERDFRRYINKLGYKEF 710

Query: 273 LKMYRTGF----MPKNLEFSVFYDKMRDEAI 353
           LK+   GF    + K LE     D M + A+
Sbjct: 711 LKLPEMGFGTSLLQKRLEIETMTDNMSELAV 741


>06_02_0019 - 10656005-10657511,10657712-10658739
          Length = 844

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 10/32 (31%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
 Frame = -2

Query: 553 STSIFINILGY-TSYGAGTTKPWQSERWITAM 461
           +T+I ++++G   +YGAG+++ W++  ++ AM
Sbjct: 750 NTTIVLDMIGLLVAYGAGSSREWETSGYVIAM 781


>03_02_0186 -
           6243487-6243799,6243892-6244400,6244495-6244557,
           6245482-6245681,6246125-6246519,6246776-6246888
          Length = 530

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/24 (58%), Positives = 14/24 (58%)
 Frame = +2

Query: 407 CLFCACASQSRSILVCLLHRCYPA 478
           CLFC     SR ILVC L RC  A
Sbjct: 58  CLFCEANFISRRILVCDLLRCLVA 81


>10_08_0188 - 15596062-15597084,15597513-15597791
          Length = 433

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 50  WACSRRAQQCSTKAEHHKDKKCG 118
           W C RR +Q ++  ++H D+K G
Sbjct: 206 WHCQRRVRQPNSLCDYHSDQKRG 228


>03_02_0882 -
           12121917-12124446,12124739-12124919,12125057-12125134,
           12125731-12125764,12125864-12125975,12126053-12126238,
           12126505-12126575
          Length = 1063

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 129 VEKQKKILSFFQDVSQLNTDDEY 197
           VE+Q    SF QD++QL  DD Y
Sbjct: 143 VEQQVNCFSFLQDLNQLYADDLY 165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,774,309
Number of Sequences: 37544
Number of extensions: 281611
Number of successful extensions: 665
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)