Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a02f
         (602 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21330| Best HMM Match : JmjC (HMM E-Value=0.0054)                   29   2.9  
SB_13455| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_10710| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79)            27   8.8  
SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)                        27   8.8  
SB_4921| Best HMM Match : Myosin_head (HMM E-Value=7.39998e-41)        27   8.8  

>SB_21330| Best HMM Match : JmjC (HMM E-Value=0.0054)
          Length = 304

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +3

Query: 99  IKTKNVDAVFVEKQKKILSFFQDVSQLNTDD-EYYKIGKD---YDIEM 230
           I  + ++A  +EK K++L FF  +   N +D EY  I  +   Y +EM
Sbjct: 227 ILKEEIEAFSIEKMKEVLLFFDPIDVSNMEDFEYSHINAEDIMYSLEM 274


>SB_13455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1387

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 566 VNFLQHFHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQELT 438
           VN +Q F    + ++   +SR+   + +R  DN D EG+ E T
Sbjct: 658 VNDIQDFAFSNNMKLNPAKSRHQAFIPLRCKDNGDREGMFEAT 700


>SB_10710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 237 PYSFRYHSLCQF-YNIHHQCLVGSHLGRRTEFSFAFQQIRHP 115
           P+S+R    C+F   +H+ CL  +H  +  EF +   +   P
Sbjct: 68  PFSYRNKVFCRFDAAVHYDCLYVTHKKKHVEFRWLHIEFLQP 109


>SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79)
          Length = 1091

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 20  GNHEVCLNSGWACSRRAQQCSTKA 91
           G  EV L SG   SRRA QC+ +A
Sbjct: 134 GKEEVMLRSGKLNSRRAVQCTVRA 157


>SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 1981

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 20   GNHEVCLNSGWACSRRAQQCSTKA 91
            G  EV L SG   SRRA QC+ +A
Sbjct: 1859 GKEEVMLRSGKLNSRRAVQCTVRA 1882


>SB_4921| Best HMM Match : Myosin_head (HMM E-Value=7.39998e-41)
          Length = 1017

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 486 CHGFVVPAPYEVYPKMFMNMEVLQKIYVTKMQDGLI 593
           C  F+V  P  +  K  +++  +QKI V+ ++DGL+
Sbjct: 849 CSEFIVADPKSMSAKYRVSLGDVQKISVSPLKDGLV 884


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,731,368
Number of Sequences: 59808
Number of extensions: 353732
Number of successful extensions: 870
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)