Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a01r
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    29   0.73 
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    26   5.1  
SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.1  

>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +1

Query: 373 LYRAVTNSGFVLWQSTNRGYNSIG-INSYSTRSQNKTKLYYLCPV 504
           L+   TN   + W  T  G+  +  IN +  R +NK+  Y +CP+
Sbjct: 480 LHVQTTNESVIKWY-TAHGFKIVKQINDFYRRLENKSAFYMVCPL 523


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 294 DHRYEIILHLMKPGHRRL 241
           DH YE +++ MK GH+++
Sbjct: 562 DHAYESLIYYMKTGHKQV 579


>SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 210

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = -2

Query: 676 PRRKYTNSGSWSYPTPRCSETPIRL--KPGERSIN 578
           P  ++ N+ S+ +P    S+TPIRL  + G++S++
Sbjct: 70  PFHEFLNNRSYRFPKLDYSQTPIRLAIRSGKKSVH 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,709,685
Number of Sequences: 5004
Number of extensions: 50379
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)