Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10a01f
(566 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 46 5e-06
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 30 0.27
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.36
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 29 0.36
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 29 0.48
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S... 29 0.48
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 29 0.48
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||... 29 0.63
SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase |Schizosaccharom... 29 0.63
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 27 1.5
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 27 1.5
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 27 1.9
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 27 2.5
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 2.5
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 27 2.5
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 27 2.5
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 3.4
SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 26 4.4
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 5.9
SPAC23A1.16c |||DUF408 family protein|Schizosaccharomyces pombe|... 25 5.9
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 25 7.7
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 45.6 bits (103), Expect = 5e-06
Identities = 36/113 (31%), Positives = 65/113 (57%), Gaps = 6/113 (5%)
Frame = +2
Query: 245 LQLAAELGK--TLLERNKELETALRQHQNVIEDQAQEIEYLTKQTVALRE-VNDS-RLRI 412
LQ+ + K +L E+N E + L++ + ++++ +E+ L K LRE DS +LR+
Sbjct: 481 LQMKETVNKLTSLQEQNNEFDRQLKEQEEDLQNKEEELTELRK---LLREQTQDSQKLRL 537
Query: 413 Y-EQLELSIQDLERANHRLAVDHAAD-KKHIKSLCSNIDTVEAKCEELQKTVD 565
EQLEL QDL++A + ++D + IKSL S++ +A+C Q+ ++
Sbjct: 538 LVEQLELERQDLKQAGENHYSNLSSDYETQIKSLESSLTNSQAECVSFQEKIN 590
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 29.9 bits (64), Expect = 0.27
Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 2/109 (1%)
Frame = +2
Query: 173 KKKFGGNEELEQDDITSRRCMLDDLQLAAELGKTLLERN--KELETALRQHQNVIEDQAQ 346
K + N+ + Q + S ML+ ++ +LE N + +ETA QHQ ++D A
Sbjct: 224 KAEAEANKIVSQKGMESLEIMLNSMKSENHQRMAMLEENHARVMETAELQHQAELQDFAS 283
Query: 347 EIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANHRLAVDHAADKK 493
IE K + E + E I++L N L + ++K
Sbjct: 284 NIE--QKANSLIMEYKNELQSAEEHFSHKIKELTSEN-ELKISRLQEEK 329
>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 575
Score = 29.5 bits (63), Expect = 0.36
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = +3
Query: 243 ICNWRPNSGKPYSNATRNSRQPFASIKMLL----KIKHKKSNILQSKRLLCE 386
I +W+ S N + ++ F SI M+L K +++KSN+L + R LCE
Sbjct: 237 IPSWKSRSSDSKYNDHQFVKKNFFSIIMVLESLAKSQYRKSNVLAADRSLCE 288
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 29.5 bits (63), Expect = 0.36
Identities = 25/95 (26%), Positives = 44/95 (46%)
Frame = +2
Query: 191 NEELEQDDITSRRCMLDDLQLAAELGKTLLERNKELETALRQHQNVIEDQAQEIEYLTKQ 370
N L Q + S + +D LQL L R + L + Q I +QE++ L +
Sbjct: 1224 NRGLNQQ-VKSLQSTVDSLQLE-------LNRLQSLPVSNDQTDTPIISGSQEVQLLYES 1275
Query: 371 TVALREVNDSRLRIYEQLELSIQDLERANHRLAVD 475
LR+ ND++L ++LE ++ L + + L +
Sbjct: 1276 NSVLRKDNDAKLGKIQELEKEVEKLNASLNPLQTE 1310
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 29.1 bits (62), Expect = 0.48
Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 1/106 (0%)
Frame = +2
Query: 206 QDDITSRRCMLDDLQLAAELGKTLL-ERNKELETALRQHQNVIEDQAQEIEYLTKQTVAL 382
QD+I S +++ +E LL E NK L L H+N + ++ +Q + +
Sbjct: 992 QDEIASSSLRCENITKDSETRVALLLEENKHLNNELSSHRNAEKQHLEKENDYKQQLLLV 1051
Query: 383 REVNDSRLRIYEQLELSIQDLERANHRLAVDHAADKKHIKSLCSNI 520
E YE+ L D +L D+ + ++ L I
Sbjct: 1052 TEDLRKTREDYEKELLRHADARSTLQKLREDYTKALEQVEDLNKEI 1097
Score = 25.8 bits (54), Expect = 4.4
Identities = 19/73 (26%), Positives = 38/73 (52%)
Frame = +2
Query: 191 NEELEQDDITSRRCMLDDLQLAAELGKTLLERNKELETALRQHQNVIEDQAQEIEYLTKQ 370
NE + D TS +Q E + +L+++ E + A + HQ +++ +E+E K
Sbjct: 1583 NESIS-DFSTSTADFTTFVQKEWEKRREILQKDVEEQVA-QSHQKQLDNIRKELEMRNKL 1640
Query: 371 TVALREVNDSRLR 409
+++ E N +R+R
Sbjct: 1641 KLSMLEKNLARVR 1653
>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 272
Score = 29.1 bits (62), Expect = 0.48
Identities = 20/108 (18%), Positives = 54/108 (50%)
Frame = +2
Query: 146 TMSEVMDLVKKKFGGNEELEQDDITSRRCMLDDLQLAAELGKTLLERNKELETALRQHQN 325
T+ + + + + GNEE++ + + + D +L ++ K + K LET+ +
Sbjct: 87 TLYNLKEFEELEAPGNEEVKAKEKRIKSPDVKDFKLPKDILKVKEKSEKPLETSQKVEIE 146
Query: 326 VIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANHRLA 469
+E + E E + ++T +E +S++++ + E ++L ++ ++
Sbjct: 147 TVETKPGEPE-VKQETNLQKEKKESKVKLESKEEKISRNLRSSSRSIS 193
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 29.1 bits (62), Expect = 0.48
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 3/108 (2%)
Frame = +2
Query: 236 LDDLQLAAELGKTLLERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRL--- 406
L+ L +L + +NKELE +++ N I+ +E+E ++ L + + +
Sbjct: 1095 LESLNDKDQLYQLQATKNKELEAKVKECLNNIKSLTKELENKEEKCQNLSDASLKYIELQ 1154
Query: 407 RIYEQLELSIQDLERANHRLAVDHAADKKHIKSLCSNIDTVEAKCEEL 550
I+E L L + DLE + D + +K + +N + K +L
Sbjct: 1155 EIHENLLLKVSDLENYKKKYE-GLQLDLEGLKDVDTNFQELSKKHRDL 1201
>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 28.7 bits (61), Expect = 0.63
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Frame = +2
Query: 251 LAAELGKTLLERNKELETALRQHQNVIEDQA-----QEIEYLTKQTVALREVNDSRLRIY 415
L LGK E +E ++A + + +E++ QE++ L KQ E+ +SRL+
Sbjct: 80 LLGTLGKFQQESEREQKSARKVKRAELEEKLAKRREQELQELEKQEKIEAEILESRLQEQ 139
Query: 416 EQLELSIQDLERANHRLAVDH 478
++ L +L+R + + +D+
Sbjct: 140 RKVALDELELDRNDLKKVLDN 160
>SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 236
Score = 28.7 bits (61), Expect = 0.63
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 191 NEELEQDDITSRRCMLDDLQLAAELGKTLLERNKELETALRQHQNVI 331
N EL +D +R L+L +L ++E N +LET NV+
Sbjct: 148 NPELTAEDAENRVQAQMPLELKCQLADIVIENNSDLETLYENIHNVL 194
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 27.5 bits (58), Expect = 1.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 329 IEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQ 439
I+ + Q I+ + T L NDSR+RIY + S++
Sbjct: 447 IQTRTQMIDNIAGDTEMLVTTNDSRIRIYNLRDKSLE 483
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 27.5 bits (58), Expect = 1.5
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 212 DITSRRCMLDDLQLAAELGKTLLERNKELETALRQHQN 325
++T+ R L +LQL AE G+T+ E T + + +N
Sbjct: 220 ELTNLRICLHELQLNAEKGETIDESEDSKNTLVTEDEN 257
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 27.1 bits (57), Expect = 1.9
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = +2
Query: 281 ERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANH 460
E+ KE+ AL + + + +EIE L + L+ + + + + +I DLE N
Sbjct: 933 EKFKEVSQALAEANEKLNARDEEIERLKVDIIGLQNASLNMQSLKDSDNRTISDLESKNK 992
Query: 461 RL 466
L
Sbjct: 993 EL 994
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 26.6 bits (56), Expect = 2.5
Identities = 25/96 (26%), Positives = 41/96 (42%)
Frame = +2
Query: 161 MDLVKKKFGGNEELEQDDITSRRCMLDDLQLAAELGKTLLERNKELETALRQHQNVIEDQ 340
MD +++K E D+ +R + EL +L E+ E +L + E Q
Sbjct: 1 MDKLREKINA-ARAETDEAVARAEAAEAKLKEVELQLSLKEQEYE---SLSRKSEAAESQ 56
Query: 341 AQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLE 448
+E+E TKQ + D + EQL ++ LE
Sbjct: 57 LEELEEETKQLRLKADNEDIQKTEAEQLSRKVELLE 92
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 2.5
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +2
Query: 257 AELGKTLLERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQ-LELS 433
AE T L R EL+ L Q ++ +++ K A + +S L + ++ +
Sbjct: 183 AERAATAL-REAELKHRLAQANADVDVANSKLDIALKNEAAWKAERESSLAHQKAVIDSA 241
Query: 434 IQDLERANHRLAVDHAADKK 493
+LERA H AV A KK
Sbjct: 242 RAELERARHEAAVADATYKK 261
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 26.6 bits (56), Expect = 2.5
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 491 KHIKSLCSNIDTVEAKCEELQKTVD 565
K ++ +CS+I E+ +EL+KTVD
Sbjct: 301 KRVEVVCSSISYKESDKKELEKTVD 325
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 26.6 bits (56), Expect = 2.5
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +2
Query: 275 LLERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYE 418
LL +NK + +H N + Q EYL T++++ +N+S + E
Sbjct: 769 LLVKNKISLDDVLKHHNKYKFGKQSTEYLKINTLSMKSLNNSSRKFLE 816
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.2 bits (55), Expect = 3.4
Identities = 14/70 (20%), Positives = 30/70 (42%)
Frame = +2
Query: 341 AQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANHRLAVDHAADKKHIKSLCSNI 520
+++++ LT L + + + + + L S Q + H L DH + +L +
Sbjct: 758 SEDVKRLTANVETLTQDSKAMKQSFTSLVNSYQSISNLYHELRDDHVNMQSQNNTLLESE 817
Query: 521 DTVEAKCEEL 550
++ CE L
Sbjct: 818 SKLKTDCENL 827
>SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 115
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 173 SPDPLLLTLFTVYGTMRYIDVF 108
SP P L LF+V G + +DVF
Sbjct: 48 SPSPFLRWLFSVLGVLMSMDVF 69
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 25.4 bits (53), Expect = 5.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 243 ICNWRPNSGKPYSNATRNS 299
IC+W PNS +S +NS
Sbjct: 349 ICDWIPNSSNMFSMIVKNS 367
>SPAC23A1.16c |||DUF408 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 25.4 bits (53), Expect = 5.9
Identities = 22/83 (26%), Positives = 36/83 (43%)
Frame = +2
Query: 137 KQ*TMSEVMDLVKKKFGGNEELEQDDITSRRCMLDDLQLAAELGKTLLERNKELETALRQ 316
KQ T ++ D K +GG + S+ C L Q EL L ++ A++Q
Sbjct: 93 KQQTRYKLEDSGMKVYGG-----LNYYCSKDCFLKSCQYMVELSDEPLWIREDAREAMKQ 147
Query: 317 HQNVIEDQAQEIEYLTKQTVALR 385
H + +D+A E K+ +R
Sbjct: 148 HLDPRQDEAFRKELENKKIEDVR 170
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 25.0 bits (52), Expect = 7.7
Identities = 23/96 (23%), Positives = 43/96 (44%)
Frame = +2
Query: 275 LLERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERA 454
LLER K++ A+RQ + I D + ++ + + + ++ L L I D +
Sbjct: 689 LLEREKKMSDAMRQTKLTIVDDHNSRKLESQYNEFISQCSAHYENVF-SLNLVISDAMKL 747
Query: 455 NHRLAVDHAADKKHIKSLCSNIDTVEAKCEELQKTV 562
+ +A +K+ NI T++A E L K +
Sbjct: 748 TNNIA-------DALKNNKVNIGTIKASLEVLVKCI 776
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,198,237
Number of Sequences: 5004
Number of extensions: 42298
Number of successful extensions: 169
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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