Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a01f
         (566 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    26   0.23 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    26   0.23 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   3.7  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   3.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   3.7  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 361 KIFDFLCLIFNNILMLAKGCLEFLVAFE*GFP 266
           +IF+ +C++   ++    GCL+FLV    GFP
Sbjct: 278 RIFNLICMML--LIGHWSGCLQFLVPMLQGFP 307


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 361 KIFDFLCLIFNNILMLAKGCLEFLVAFE*GFP 266
           +IF+ +C++   ++    GCL+FLV    GFP
Sbjct: 246 RIFNLICMML--LIGHWSGCLQFLVPMLQGFP 275


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 455 NHRLAVDHAADKKHIKSLCSNID 523
           NH   +   A K ++KSL SN D
Sbjct: 249 NHEKMLREQAKKMNVKSLVSNQD 271


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 455 NHRLAVDHAADKKHIKSLCSNID 523
           NH   +   A K ++KSL SN D
Sbjct: 249 NHEKMLREQAKKMNVKSLVSNQD 271


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 492 NTLSHYAQTLTLWRPNAKNYKRL 560
           +T + ++QT   W P  +NYK L
Sbjct: 431 STSAGFSQTNKTWLPVNENYKSL 453



 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 81  QRLGDQLI*RLRNFTKRVITVN 16
           + LG+  +  + NF+K  +TVN
Sbjct: 500 RELGNDTVIVMMNFSKNPVTVN 521


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,399
Number of Sequences: 438
Number of extensions: 2801
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)