Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1h22f
(641 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 30 0.33
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 0.57
SPAC1952.15c |rec24|mug6|meiotic recombination protein Rec24|Sch... 28 1.00
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr... 27 1.7
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 27 3.0
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation... 26 5.3
SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr 2|||... 25 7.0
SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1 |Schizosa... 25 9.3
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces... 25 9.3
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 25 9.3
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 29.9 bits (64), Expect = 0.33
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Frame = -2
Query: 184 FRSNQTFSCNKAAMLIIPKFRFELYL-----NTIKTLVH-TIKLNFYVNKVNRANLTA 29
FRSN + S IIP LYL +TI T+ H T ++ +N+VN L A
Sbjct: 700 FRSNTSGSAKSEGYYIIPTTEKSLYLPLRNRSTIDTISHSTSRITSRMNRVNNRRLAA 757
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 29.1 bits (62), Expect = 0.57
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 354 TELSTKVISLENENKDLKKAIDDLRN 431
T+ +K+ S E ENK LK +ID+ +N
Sbjct: 388 TDAESKLSSFEQENKSLKGSIDEYQN 413
>SPAC1952.15c |rec24|mug6|meiotic recombination protein
Rec24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 350
Score = 28.3 bits (60), Expect = 1.00
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 102 VFKYNSNLNFGIISMAALLHEKVWLDRNVYNDAEKAYYESLSKV 233
+ + N+N G+IS A L V+L++ ++N A E L K+
Sbjct: 207 IMQNNANNGTGVISRAKFLEFYVFLEQLIFNKLSFASVEQLEKL 250
>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 351 NTELSTKVISLENENKDLKKAIDDLRNLVISLQVR 455
NT+LS K+ ENE +DL + L++ ++ L+ R
Sbjct: 36 NTQLSIKIRESENEIQDLIQENFTLKSYLVKLEAR 70
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +3
Query: 318 MDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLE 470
M ++ ++G T + + +E+ENK L + D+RN V L+ + E
Sbjct: 247 MQAIDDISGTIET-IKSDCYKVESENKGLINEVMDMRNFVQQLEQELYAFE 296
>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
specificity factor complex subunit
Pta1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 282 KARQHIKNSLECMDSVATLAGVPNTELSTKVIS 380
K Q + ++ C+D++ +L V N E+ VIS
Sbjct: 63 KFEQKLDLAVTCLDTIVSLYAVDNEEVKKDVIS 95
>SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 225
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 348 PNTELSTKVISLENENKDLKKAID 419
PNTEL+ + L KDLK A++
Sbjct: 37 PNTELTYAIDELSETLKDLKAAVE 60
>SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 25.0 bits (52), Expect = 9.3
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +3
Query: 294 HIKNSLECMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRNL 434
HI NS M + +PN ELST + E E +L K I + L
Sbjct: 26 HINNS--GMSELNKKLQLPNVELSTLSHTQEQEFNELNKLIRKINEL 70
>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.0 bits (52), Expect = 9.3
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 303 NSLECMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRNL 434
NSL+ ++A L N EL + L+NE D KA D + L
Sbjct: 225 NSLKSYKAIAYLKKTFNEELQIRKNKLDNEEWD--KAFSDAKKL 266
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 25.0 bits (52), Expect = 9.3
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +3
Query: 273 EVAKARQHIKNSLECMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQ 449
E+ + I + M SV EL ++ SLE NKD + LR+ + SL+
Sbjct: 1462 ELKALKDQINSEKAKMFSVQVQYEKREQELQKRIASLEKVNKDSLIDVRALRDRIASLE 1520
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,132,987
Number of Sequences: 5004
Number of extensions: 38524
Number of successful extensions: 108
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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