Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1h16r
         (405 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   1.7  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    20   9.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    20   9.3  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 260 IGTXASNDRLLRSFSVTR 207
           IGT A+ND +L S S  +
Sbjct: 174 IGTLATNDNILESISYVK 191


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 132 SDGPDAHTVGCCIPQVDNLRGSCHTTG 212
           S+  D H +   I  +DNL  + H  G
Sbjct: 87  SNYTDVHPIFGTISDLDNLVSAAHEKG 113


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 132 SDGPDAHTVGCCIPQVDNLRGSCHTTG 212
           S+  D H +   I  +DNL  + H  G
Sbjct: 87  SNYTDVHPIFGTISDLDNLVSAAHEKG 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,749
Number of Sequences: 438
Number of extensions: 1501
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)