Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1h15f
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    37   0.004
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    26   6.6  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    25   8.7  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    25   8.7  

>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 19/87 (21%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
 Frame = +3

Query: 423 TANLPMEINRALQSNTYLTGQF-LTIADVALYYIVYPLLEHMSVAERDAFVHLCRWSKHI 599
           T ++  +++  L+S+T++     +++AD+A+Y  ++  +  +S  E     ++CRW   I
Sbjct: 121 TQSIVEQLDEFLKSSTFIAQDSGISVADLAVYARIHSYICGLSAKEGYKLNNVCRWFDFI 180

Query: 600 QAQPRVCHNRPPLPLNAVSLSVLAPAV 680
           Q Q  V      + +   ++ + AP +
Sbjct: 181 QHQESVMEAANSMSMKLANIDLNAPKI 207


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
            Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 555  LLQTYAPVKDTLCNIMQHQQLLETGQSDMCYFVE 454
            LLQ Y  +K  + N+ + QQLL T  S++   V+
Sbjct: 963  LLQRYWDLKREIINLQKRQQLLLTTNSNLMSSVD 996


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 522 LCNIMQHQQLLETGQSDMCYFVELCLFPL 436
           +C ++ +QQL +  +S++  F   CL+PL
Sbjct: 379 ICFLLSYQQLQKALKSNLGLFQLSCLYPL 407


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = -2

Query: 425 SRCSSLLAVPHFETILKMIVTKPSTFLFSSTAVGTLSVL*QTAPTET 285
           S+ +S  A    ETI+   V   STF  S T  GT+ V+  TA T T
Sbjct: 203 SKTTSPTAGTITETIVSGSVGYTSTFPASGTTSGTVEVVEPTAGTIT 249



 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -2

Query: 389 ETILKMIVTKPSTFLFSSTAVGTLSVL*QTAPTET 285
           ETI+   V   STF  S T  GT+ V+  TA T T
Sbjct: 565 ETIVSGSVGYTSTFPASGTTSGTVEVVEPTAGTVT 599



 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -2

Query: 389 ETILKMIVTKPSTFLFSSTAVGTLSVL*QTAPTET 285
           ETI+   V   STF  S T  GT+ V+  TA T T
Sbjct: 600 ETIVSGSVGYTSTFPASGTTSGTVEVVEPTAGTVT 634



 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -2

Query: 389 ETILKMIVTKPSTFLFSSTAVGTLSVL*QTAPTET 285
           ETI+   V   STF  S T  GT+ V+  TA T T
Sbjct: 740 ETIVSGSVGYTSTFPASGTTSGTVEVVEPTAGTVT 774


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,148,266
Number of Sequences: 5004
Number of extensions: 66362
Number of successful extensions: 163
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)