Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1h15f
(747 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_04_0032 + 15273716-15273865,15274658-15274706,15275737-15276188 35 0.079
01_04_0031 + 15271193-15271342,15272134-15272182,15272894-15273294 33 0.24
01_04_0029 - 15240827-15241290,15241925-15241973,15242056-15242205 33 0.32
01_04_0030 - 15263341-15263801,15264631-15264679,15264783-15264932 32 0.56
01_04_0045 + 15392817-15392963,15393108-15393156,15393463-15393911 31 0.97
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637... 30 1.7
01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931 30 1.7
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 29 3.0
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 29 3.9
>01_04_0032 + 15273716-15273865,15274658-15274706,15275737-15276188
Length = 216
Score = 34.7 bits (76), Expect = 0.079
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 438 MEINRA-LQSNTYLTGQFLTIADVALYYIVYPLLEHMSVAERDAFVHLCRWSKHIQAQPR 614
+E+ A L + YL G F+++AD++ + VY LL + +A+ + W + +P
Sbjct: 144 LEVYEAQLSKSKYLAGDFISLADISHFPTVYYLLASAHASVLEAYPRVKAWIDDVMQRPS 203
Query: 615 V 617
V
Sbjct: 204 V 204
>01_04_0031 + 15271193-15271342,15272134-15272182,15272894-15273294
Length = 199
Score = 33.1 bits (72), Expect = 0.24
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +3
Query: 471 YLTGQFLTIADVALYYIVYPLLEHMSVAERDAFVHLCRWSKHIQAQPRV 617
YL G F+++AD++ + + + LL + DA+ H+ W + +P V
Sbjct: 142 YLAGDFISLADLSHFPMTHYLLATPHASVLDAYPHVKSWINDLMKRPAV 190
>01_04_0029 - 15240827-15241290,15241925-15241973,15242056-15242205
Length = 220
Score = 32.7 bits (71), Expect = 0.32
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 438 MEINRA-LQSNTYLTGQFLTIADVALYYIVYPLLEHMSVAERDAFVHLCRWSKHIQAQPR 614
+E+ A L NTYL G FL+ D++ + + + + D + H+ W + A+P
Sbjct: 147 LEVYEARLSQNTYLAGNFLSFVDLSHFPFTFYFMATPYASLLDKYPHVKAWWDGLAARPS 206
Query: 615 V 617
+
Sbjct: 207 I 207
>01_04_0030 - 15263341-15263801,15264631-15264679,15264783-15264932
Length = 219
Score = 31.9 bits (69), Expect = 0.56
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 438 MEINRA-LQSNTYLTGQFLTIADVALYYIVYPLLEHMSVAERDAFVHLCRWSKHIQAQPR 614
+E+ A L +TYL G F++ AD+ + + + + D++ H+ W + + A+P
Sbjct: 147 LEVYEARLSQSTYLAGDFVSFADLNHFPYTFYFMGTPYASLFDSYPHVKAWWERLMARPS 206
Query: 615 V 617
V
Sbjct: 207 V 207
>01_04_0045 + 15392817-15392963,15393108-15393156,15393463-15393911
Length = 214
Score = 31.1 bits (67), Expect = 0.97
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +3
Query: 471 YLTGQFLTIADVALYYIVYPLLEHMSVAERDAFVHLCRWSKHIQAQPRV 617
YL G FL++AD++ + Y LL A D F + W + A+P V
Sbjct: 155 YLAGDFLSLADLSHFPTAYYLLATPHAAMLDEFPLVKAWIDGMLARPSV 203
>01_06_1167 -
35062766-35062870,35063165-35063228,35063647-35063738,
35064137-35064205,35064322-35064412,35064509-35064732,
35065064-35065180,35065583-35065651,35066172-35066237,
35066335-35066505,35066581-35066661,35067620-35067700
Length = 409
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +3
Query: 444 INRALQSNTYLTGQFL--TIADVALYYIVYPLLEHMSVAERDAFVHLCRWSKHIQ 602
+N+ L + L G ++AD+ ++ + + H+ E + H+ RW +IQ
Sbjct: 79 LNQDLSQKSVLLGNGFKPSVADIVVFATIQVFVSHLGENELQKYPHVLRWMDYIQ 133
>01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931
Length = 218
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +3
Query: 456 LQSNTYLTGQFLTIADVALYYIVYPLLEHMSVAERDAFVHLCRWSKHIQAQPRV 617
L + YL G FL+ AD+ + + + + DA+ H+ W + + ++P +
Sbjct: 154 LSGSRYLAGDFLSFADLNHFPFTFYFMATPCASLFDAYPHVKAWWEGLMSRPSI 207
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 444 INRALQSNTYLTGQFLTIADVALYYIVY-PLLEHMSVAERDAFVHLCRWSKHIQAQP 611
+N L SNTYL G +T+AD+ + +Y M+ + F H+ R+ + QP
Sbjct: 150 LNTHLASNTYLVGHSVTLADIVMTCNLYMGFARIMTKSFTSEFPHVERYFWTMVNQP 206
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 444 INRALQSNTYLTGQFLTIADVALYYIVY 527
+N L SNTYL G +T+AD+ + +Y
Sbjct: 711 LNTHLASNTYLVGHSVTLADIVMTCNLY 738
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 444 INRALQSNTYLTGQFLTIADVALYYIVY 527
+N L SNTYL G +T+AD+ + +Y
Sbjct: 165 LNTHLASNTYLVGHSVTLADIVMTCNLY 192
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,894,474
Number of Sequences: 37544
Number of extensions: 381216
Number of successful extensions: 817
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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