Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1h15f
         (747 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72507-7|CAD56569.1|  373|Caenorhabditis elegans Hypothetical pr...    38   0.006
Z72507-6|CAA96631.1|  398|Caenorhabditis elegans Hypothetical pr...    38   0.006
U80952-4|AAB38095.1|  662|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U40409-3|ABO16455.1|  681|Caenorhabditis elegans Related to yeas...    28   8.1  
U40409-2|AAA81388.3|  759|Caenorhabditis elegans Related to yeas...    28   8.1  
U40409-1|ABO16456.1|  807|Caenorhabditis elegans Related to yeas...    28   8.1  

>Z72507-7|CAD56569.1|  373|Caenorhabditis elegans Hypothetical
           protein F17C11.9b protein.
          Length = 373

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
 Frame = +3

Query: 444 INRALQSNTYLTGQFLTIADVALYYIVYPLLEHMSVAE-RDAFVHLCRWSKHIQAQPRV 617
           ++R L   TYL G+ L++ADV++   + P  +++  A  R + V++ RW + +  QP V
Sbjct: 95  LDRVLVKKTYLVGERLSLADVSVALDLLPAFQYVLDANARKSIVNVTRWFRTVVNQPAV 153


>Z72507-6|CAA96631.1|  398|Caenorhabditis elegans Hypothetical
           protein F17C11.9a protein.
          Length = 398

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
 Frame = +3

Query: 444 INRALQSNTYLTGQFLTIADVALYYIVYPLLEHMSVAE-RDAFVHLCRWSKHIQAQPRV 617
           ++R L   TYL G+ L++ADV++   + P  +++  A  R + V++ RW + +  QP V
Sbjct: 120 LDRVLVKKTYLVGERLSLADVSVALDLLPAFQYVLDANARKSIVNVTRWFRTVVNQPAV 178


>U80952-4|AAB38095.1|  662|Caenorhabditis elegans Hypothetical
           protein F54H5.5 protein.
          Length = 662

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 393 MWNCKQ*RATTANLPMEINRALQSNTYLTGQFLTIADVALYYIVYPL 533
           +WN K    +   +  EI + +Q       QFLT+  + L  ++YP+
Sbjct: 205 LWNVKLRPGSNRKIDNEIRKEIQRQLACDPQFLTMLKLLLPLLIYPV 251


>U40409-3|ABO16455.1|  681|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 41, isoform b
           protein.
          Length = 681

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 546 SVAERDAFVHLCRWSKHIQA 605
           S +ERD F+H C W++++ A
Sbjct: 44  SGSERDGFIHCCSWNENLIA 63


>U40409-2|AAA81388.3|  759|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 41, isoform a
           protein.
          Length = 759

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 546 SVAERDAFVHLCRWSKHIQA 605
           S +ERD F+H C W++++ A
Sbjct: 44  SGSERDGFIHCCSWNENLIA 63


>U40409-1|ABO16456.1|  807|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 41, isoform c
           protein.
          Length = 807

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 546 SVAERDAFVHLCRWSKHIQA 605
           S +ERD F+H C W++++ A
Sbjct: 92  SGSERDGFIHCCSWNENLIA 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,377,529
Number of Sequences: 27780
Number of extensions: 377112
Number of successful extensions: 843
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)