Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1h09r
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr...    27   2.3  
SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    26   4.0  
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    26   4.0  
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    25   5.3  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   7.0  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    25   9.2  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    25   9.2  

>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 431

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
 Frame = -1

Query: 346 RFRHRNNYD-PFYVTVNATVKKGFVISYLEVTATVDALGEVDFNLIRGQSGSKSVAFQLV 170
           R+  +N Y+ P   T    ++  F  S  +  +T D L     NL+      K++   + 
Sbjct: 146 RWLIKNKYEVPEPGTREQLLETVFQASMGDAISTNDELESWSNNLLLSMLDQKNITVPIG 205

Query: 169 SNHSDFLAYSYLTYGIREEEYR-KIKNI 89
           ++H D +  +   Y I E + + K+ NI
Sbjct: 206 ASHDDLIVLARRYYDIEERKSQDKVTNI 233


>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 36  ASQFWLSLIPLFVIGREIIFLIFLYSSSLMPY 131
           A  FW+ + P F+I    I L+ L+   + PY
Sbjct: 85  AFSFWVQMHPWFLILNFFISLVVLFGLIMKPY 116


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 141 EYAKKSE*FETSWNATDFDPL 203
           +YA+K E F+   N TDFD L
Sbjct: 228 KYARKKEGFQILLNRTDFDEL 248


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 32  NREPVLVEFNSVVRHWKRNNIFDLSILLLP 121
           ++E  ++ FN +V  + R+NI D S +L+P
Sbjct: 847 SQELYIILFNGMVFTFPRDNISDASAVLIP 876


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -1

Query: 364 MTGGSDRFRHRNNYDPFYVTVNATVKKGFVISYLEVTATVDALGEVDFNLIR 209
           +TG      H NN +  YV ++  +K  F +  L     VD    VDF  +R
Sbjct: 691 LTGMKYPLGHSNNINDAYVVIHTLLKVIFSVVPLPFDVPVD--NSVDFPYLR 740


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -1

Query: 466 CLLLGTVIVGVVSFPQLFETKKFKIGIEYDNSLPMTGGSD 347
           CL  G  +  V S   +FE  KF I   + N   +  GSD
Sbjct: 804 CLRCGNSLFNVFSRSFVFEGAKFSIVCSHCNRKLLKSGSD 843


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 328 NYDPFYVTVNATVKKGFVISYLEVTATVDAL 236
           +YDPFY         G+VI+  E+  TV  L
Sbjct: 236 SYDPFYYMDKHNKVYGYVIAIKELAKTVPNL 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,101,981
Number of Sequences: 5004
Number of extensions: 41823
Number of successful extensions: 137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)