Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1h06r
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    31   0.28 
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    30   0.50 
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    28   2.0  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    26   6.1  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    26   6.1  

>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -3

Query: 462 AINKPDPPRPETETTIVNLNGTPQSRAESVVMRVPL-RDEDLPPTYDEALLMPRLNSSFH 286
           A N P PP P      +N      S+A   +M  PL RD  +PP    +++ P  N++ +
Sbjct: 108 ASNGPTPPNPGNGNVGLNNPSYMNSQASPNIMNAPLQRDTSVPPA--PSMVHPHTNTNAN 165

Query: 285 S 283
           S
Sbjct: 166 S 166


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
 Frame = -3

Query: 381 ESVVMRVPLRD------EDLPPTYDEALLMPRLNSSFHSL-PDFVDDEPSQRSRRSRS 229
           E  + R+PL D      +D  P       + +  S   +L PD ++DEPS  SR SRS
Sbjct: 210 EVPIFRIPLSDYETDDMDDGTPLQRHVATLNQYQSPIFNLGPDILEDEPSYSSRASRS 267


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 717 WNCEGFSVNLLLTYEFLTKEPSKIHD 640
           W   GFS+N +L Y+ L K P   HD
Sbjct: 576 WLLNGFSLNGVLKYQSLLKPPVLSHD 601


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = -3

Query: 438 RPETETTIVNLNGTPQSRAESVVMRVP-LRDEDLPPTYDEALLMPRLNSSFHSLPDFVDD 262
           RP+T TT  ++N TP  R    V   P +R      T     L PR+ ++ +       +
Sbjct: 481 RPKTATTTDSVNRTPSQRGRVAVPSTPSVRSASRAMTSPRTPL-PRVKNTQNPSRSISAE 539

Query: 261 EPSQRSRRSR 232
            PS  S  +R
Sbjct: 540 PPSATSTANR 549


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -1

Query: 743 GKST*RETDGTAKALALIFCSLTSSSRKNLRKFTIELP*FATRHRT 606
           G  T R  +    + ALI C+  ++ R++   F+IE+P   +R RT
Sbjct: 7   GCHTPRRCNRFIDSAALIDCTNKTNQREHSPSFSIEIPTTPSRKRT 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,542,048
Number of Sequences: 5004
Number of extensions: 73549
Number of successful extensions: 207
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)