Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1h06f
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    37   6e-04
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    30   0.38 
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    27   2.0  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    27   2.7  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    27   3.5  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    26   6.1  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.1  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    25   8.1  
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa...    25   8.1  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    25   8.1  

>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = +1

Query: 292 EMPCSTYTLNGLIYLDCNERGLSELPE--GLNYESQVLILTNNNFATFPSQLESFSRVQV 465
           E P S   L  L  LD +   + +LPE  G     +VL ++ N     P+ +     +++
Sbjct: 89  EFPESLCRLESLEILDISRNKIKQLPESFGALMNLKVLSISKNRLFELPTYIAHMPNLEI 148

Query: 466 LDLSGNHLNVPLPSYIEN 519
           L +  NH+  P P    N
Sbjct: 149 LKIENNHIVFPPPHIANN 166



 Score = 36.3 bits (80), Expect(2) = 6e-04
 Identities = 18/34 (52%), Positives = 24/34 (70%)
 Frame = +1

Query: 604 LDLSRNKIKNIEEDSFSGMTNLYFLDLSENRINE 705
           LD+SRNKIK + E SF  + NL  L +S+NR+ E
Sbjct: 103 LDISRNKIKQLPE-SFGALMNLKVLSISKNRLFE 135



 Score = 21.8 bits (44), Expect(2) = 6e-04
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 367 PEGLNYES-QVLILTNNNFATFPSQLESFSRVQVLDLSGNHL 489
           PE L +   + L + +N    FP  L     +++LD+S N +
Sbjct: 69  PEILKFTRLRYLNIRSNVLREFPESLCRLESLEILDISRNKI 110


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = +1

Query: 283 EQEEMPCSTYTLNGLIYLDCNERGLSELPEGLNYESQV--LILTNNNFATFPSQLESFSR 456
           E + +  S  + N L  L+     L  LP    Y   +  L L+ NNF TFP  +   S+
Sbjct: 490 ELDPLIFSGLSRNSLKELNIANNKLFFLPHSTRYLVNLTYLDLSYNNFVTFPLIITELSQ 549

Query: 457 VQVLDLSGNHLN 492
           ++ L+ S N L+
Sbjct: 550 LETLNFSHNLLS 561



 Score = 27.9 bits (59), Expect = 1.5
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = +1

Query: 316 LNGLIYLDCNERGLSELPEGLNYESQV--LILTNNNFATFPSQLESFSRVQVLDLSGNHL 489
           +  L YL C    +S +   L     +  L L  NN   FP ++   S ++V++LS N L
Sbjct: 705 MQNLKYLSCTNCEMSYVSPNLGKLKHLVHLDLHANNIKIFPEEVWQVSSLKVVNLSSNIL 764

Query: 490 -NVPLP 504
             + LP
Sbjct: 765 EKIKLP 770


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = +1

Query: 313 TLNGLIYLDCNERGLSELPEGLNYESQV--LILTNNNFATFPSQLE-SFSRVQVLDLSGN 483
           +L  L+ LD +   L+E+P  L    Q+  L L +N      +    S S +Q+L LS N
Sbjct: 354 SLQSLVSLDLSGNELTEIPYALGELPQLCSLNLASNKITGCRTFYHISLSHLQILVLSRN 413

Query: 484 HL 489
           HL
Sbjct: 414 HL 415



 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 604 LDLSRNKIKNIEEDSFSGMTNLYFLDLSENRINE 705
           L  S  K+K+I ++ F  + +L  LDLS N + E
Sbjct: 337 LRCSSCKLKSIPKNVFLSLQSLVSLDLSGNELTE 370


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = +1

Query: 598 RRLDLSRNKIKNIEEDSFSGMTNLYFLDLSENRINEFS 711
           R L+   N++ ++   SFS + NL +LD+S N++ + +
Sbjct: 649 RDLNAVENRLSSLT--SFSNLLNLQYLDISYNQLEDLT 684


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -2

Query: 508  SWATARSNGYRIDPILARARSFPIATETLRSCCSLK*ALVTHSSSLQVV 362
            SWA+ R+   +I   +  ++   + T    SCC L    + HS  +Q V
Sbjct: 1038 SWASVRNGAAQILFRIFNSQCSKLGTNAWASCCQLVIMKLLHSQPIQNV 1086


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +1

Query: 397 LILTNNNFATFPSQLESFSRVQVLDLSGNHLNVPLP 504
           L + +NN    P ++     + +LD SGN +    P
Sbjct: 186 LYINHNNLTRLPPEIGKLKNLVILDASGNSIKTIPP 221


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 110 SIAANNILTVEIYLKYMFFFYKFSCT 33
           SI  +N     IY+   FFFY F C+
Sbjct: 68  SIGLSNPNKFSIYIYIYFFFYSFLCS 93


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 2   SLHYLSHRSHTCKRICKKKTYILNIFQRSVCCW 100
           S H++  R  TCKRI K+    L+      C W
Sbjct: 30  SCHFVPRRCSTCKRINKRSIRCLSCHSVG-CLW 61


>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 275 VRRTNPPVTIPGKSQSSSLVLKTPKSMSAN 186
           V  TNP VTIP K  S+  + K P+S++ N
Sbjct: 152 VWETNPTVTIPVKRPST--LSKLPESLTEN 179


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 604 LDLSRNKIKNIEEDSFSGMTNLYFLDLSENRINE 705
           L+LS   + ++ E     +  L FLD+SEN I +
Sbjct: 271 LNLSSTSLADVAELPVHTLHKLTFLDISENNIRD 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,992,630
Number of Sequences: 5004
Number of extensions: 61737
Number of successful extensions: 205
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)