Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1h06f
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    34   0.002
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.2  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 33.9 bits (74), Expect = 0.002
 Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 12/140 (8%)
 Frame = +1

Query: 316 LNGLIYL---DCNERGLSELPEGL---NYESQVLILTNNNFATFPSQLES-FSRVQVLDL 474
           L GL  L   + +   L  LPEGL     + + + L  N     P  + +   ++ VL+L
Sbjct: 257 LTGLTVLRTFNASYNSLDSLPEGLFASTRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNL 316

Query: 475 SGNHLNVPLPSYIENWXXXXXXXXXXXXYESWLN-DGRQYK----FRRLDLSRNKIKNIE 639
           +GN L          +            Y    + D R +K     + LDL  N I  IE
Sbjct: 317 AGNRLGSDRVDET-TFLGLIRLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIE 375

Query: 640 EDSFSGMTNLYFLDLSENRI 699
            ++F  + NL+ L+LS+N++
Sbjct: 376 SNAFLPLYNLHTLELSDNKL 395



 Score = 31.1 bits (67), Expect = 0.011
 Identities = 16/42 (38%), Positives = 27/42 (64%)
 Frame = +1

Query: 580 GRQYKFRRLDLSRNKIKNIEEDSFSGMTNLYFLDLSENRINE 705
           GR+   R L ++ + I++I+  +F+G+ NL  L L +NRI E
Sbjct: 816 GRK-NMRVLYVNGSGIESIQNRTFNGLNNLQILHLEDNRIRE 856



 Score = 27.5 bits (58), Expect = 0.13
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 589 YKFRRLDLSRNKIKNIEEDSFSGMTNLYFLDLSENRI 699
           Y    L+LS NK++ +    F+G+  L  L LS N I
Sbjct: 383 YNLHTLELSDNKLRTVGAQLFNGLFVLNRLTLSGNAI 419



 Score = 26.6 bits (56), Expect = 0.23
 Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 3/104 (2%)
 Frame = +1

Query: 397 LILTNNNFATF-PSQLESFSRVQVLDLSGNHLNVPLPSYIENWXXXXXXXXXXXXYESWL 573
           L L+ N  A+  P    + S ++ LDLSGN L   +P  + +               ++ 
Sbjct: 412 LTLSGNAIASIDPLAFRNCSDLKELDLSGNEL-TSVPDALRDLALLKTLDLGENRISNFY 470

Query: 574 NDGRQY--KFRRLDLSRNKIKNIEEDSFSGMTNLYFLDLSENRI 699
           N   +   +   L L  N I N+       + NL  L+L+ N++
Sbjct: 471 NGSFRNLDQLTGLRLIGNDIGNLSRGMLWDLPNLQILNLARNKV 514



 Score = 26.2 bits (55), Expect = 0.31
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 598 RRLDLSRNKIKNIEEDS-FSGMTNLYFLDLSENRINEFS 711
           R LDLSRN+I  ++E+S    +  L  L L  N I E +
Sbjct: 215 RILDLSRNEITRLQENSPLLDLRQLQELHLQRNAIVEIA 253



 Score = 25.8 bits (54), Expect = 0.41
 Identities = 30/112 (26%), Positives = 39/112 (34%), Gaps = 2/112 (1%)
 Frame = +1

Query: 382 YESQVLILTNNNFATFPSQL-ESFSRVQVLDLSGNHLNVPLPSYIENWXXXXXXXXXXXX 558
           Y    L L++N   T  +QL      +  L LSGN +    P    N             
Sbjct: 383 YNLHTLELSDNKLRTVGAQLFNGLFVLNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNE 442

Query: 559 YESWLNDGRQYKF-RRLDLSRNKIKNIEEDSFSGMTNLYFLDLSENRINEFS 711
             S  +  R     + LDL  N+I N    SF  +  L  L L  N I   S
Sbjct: 443 LTSVPDALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIGNDIGNLS 494


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = -3

Query: 303 AGHFLLLISRSANQSTSHHPGQKPEQ*SGSENSKIHECEWR 181
           AG FL+L       S+    G+  E  S    S+  E  WR
Sbjct: 362 AGRFLILTESDTKLSSQGILGEDVENNSEVSKSRTKESAWR 402


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 148 ELNTKQHQNITIDRLR 101
           E+N K+ +N  +DRLR
Sbjct: 87  EVNDKKEENFIVDRLR 102


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 221 LVLKTPKSMSANGVHMLQNFHVQH 150
           LV +  +  +  GV+ L N HV H
Sbjct: 260 LVRRDSRRKNYGGVYHLDNHHVHH 283


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,854
Number of Sequences: 438
Number of extensions: 4685
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)