Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1h01r
         (950 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0607 - 11183382-11183387,11183481-11183637,11184220-111842...   308   6e-84
12_01_0250 - 1852619-1854124,1855224-1856153,1856293-1856409,185...    29   5.4  
11_01_0251 - 1926810-1928273                                           29   5.4  
10_05_0043 + 8503979-8504407,8506484-8506624,8506865-8506975,850...    29   5.4  
03_02_0710 + 10587969-10588069,10588181-10588262,10588362-105884...    29   7.2  
03_06_0626 - 35169352-35169546,35169736-35169948,35170102-351702...    28   9.5  
03_06_0437 - 33912326-33912520,33912870-33912998,33913147-339133...    28   9.5  

>09_02_0607 -
           11183382-11183387,11183481-11183637,11184220-11184284,
           11184397-11184469,11184759-11184905,11185515-11185562,
           11185637-11185716,11186112-11186439,11186525-11186576,
           11187397-11187523,11187613-11187990
          Length = 486

 Score =  308 bits (755), Expect = 6e-84
 Identities = 137/248 (55%), Positives = 187/248 (75%)
 Frame = -3

Query: 834 IDPRIKTMYEGVRDVLQKYRSGKLPKAFKMVPHLQNWEQILYLTEPTTWSAAAMYQATRI 655
           +D  I  +Y+GV + L +Y SGK+PK FK +P L+ W  +L LTEP  WS  A+YQATR+
Sbjct: 176 LDSSIIELYKGVGEFLSRYTSGKIPKGFKRIPSLECWPDVLQLTEPENWSPNAVYQATRL 235

Query: 654 FASNLKEKMAQRFYNLVLLPRVRDDLAEYKRLNFHLYQALRKALFKPGAFMKGILLPLCE 475
           F+SN+  K A RFY  +LLPRVR+D+ + KRL+F LYQ+L+K L+KP AF KGILLPLC+
Sbjct: 236 FSSNMNAKNAVRFYEAILLPRVRNDIRKNKRLHFALYQSLKKCLYKPAAFFKGILLPLCQ 295

Query: 474 AGDCTLREAIIVGSVLARNSVPVLHSSAALLKIAEMDYNGANSIFLRILFDKKYALPYRV 295
             +CTLREA+I+GS++++ S+P LH+SAAL+K+AEM+Y G  S F+++  DKKYALPYRV
Sbjct: 296 ERNCTLREAVIIGSIISKVSIPPLHASAALMKLAEMEYCGTTSYFIKLFLDKKYALPYRV 355

Query: 294 VDAVVFHFLRFQSEARVLPVLWHQALLTFVQRYKADISTEQRDALLELLRKQYHPTITQE 115
           VDAV  HF+RF  E RV+PV+WHQ+LL FV+RYK ++  + ++ L  LL  Q H  +T E
Sbjct: 356 VDAVFAHFMRFIDEERVMPVIWHQSLLAFVERYKNELEKKDKEKLARLLDHQKHYLVTPE 415

Query: 114 IRRELQQA 91
           IRREL+ +
Sbjct: 416 IRRELRMS 423


>12_01_0250 -
           1852619-1854124,1855224-1856153,1856293-1856409,
           1856777-1857157
          Length = 977

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 18/49 (36%), Positives = 28/49 (57%)
 Frame = +2

Query: 395 LECKTGTELRASTDPTIIASLSVQSPASHNGSKIPFIKAPGLNKAFLNA 541
           LE +  T L+ S D ++++SLS  SPA+   +  P    P L  +FL+A
Sbjct: 774 LERELNTRLQLSPDASVVSSLSPHSPAAATAAH-PTTSTPKLG-SFLSA 820


>11_01_0251 - 1926810-1928273
          Length = 487

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 18/49 (36%), Positives = 28/49 (57%)
 Frame = +2

Query: 395 LECKTGTELRASTDPTIIASLSVQSPASHNGSKIPFIKAPGLNKAFLNA 541
           LE +  T L+ S D ++++SLS  SPA+   +  P    P L  +FL+A
Sbjct: 284 LERELNTRLQLSPDASVVSSLSPHSPAAATAAH-PTTSTPKLG-SFLSA 330


>10_05_0043 +
           8503979-8504407,8506484-8506624,8506865-8506975,
           8507746-8508330
          Length = 421

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +2

Query: 365 SISAIFNKAALECKTGTELRAST-DPTIIASLSVQSPASHNGSKIPFIKAPGLNKAFLNA 541
           S+SAI +  +  C     +  +T DP     L + + A  +    P I APG++ A  NA
Sbjct: 194 SLSAIVSAESKSCDLFKVMYGTTIDPRSTLDLKIAAAARSSNGVAPAIAAPGMHPAQWNA 253

Query: 542 WY 547
            +
Sbjct: 254 HF 255


>03_02_0710 +
           10587969-10588069,10588181-10588262,10588362-10588414,
           10588828-10589315,10589415-10589575,10589699-10589896,
           10590091-10590277,10590355-10590611
          Length = 508

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 380 FNKAALECKTGTELRASTDPTIIASLSVQSPASHN 484
           F    +E K  ++  + + PT I S SVQ PAS N
Sbjct: 374 FPNRIVEFKVQSQCTSQSSPTTIQSQSVQMPASEN 408


>03_06_0626 -
           35169352-35169546,35169736-35169948,35170102-35170272,
           35170826-35170942,35171078-35171233
          Length = 283

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 249 RVLPVLWHQALLTFVQRYKADISTEQRDALLELLRK 142
           RVLP + H+ L   V +Y A     QR+A+   +RK
Sbjct: 121 RVLPSIIHETLKAVVAQYNASQLITQREAVSREIRK 156


>03_06_0437 -
           33912326-33912520,33912870-33912998,33913147-33913317,
           33913877-33913993,33914150-33914800
          Length = 420

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 249 RVLPVLWHQALLTFVQRYKADISTEQRDALLELLRK 142
           RVLP + H+ L   V +Y A     QR+A+   +RK
Sbjct: 286 RVLPSIIHETLKAVVAQYNASQLITQREAVSREIRK 321


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,678,767
Number of Sequences: 37544
Number of extensions: 425304
Number of successful extensions: 911
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2741249160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)