Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1h01r
         (950 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    25   1.0  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   4.1  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   7.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   7.1  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              22   7.1  

>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 25.0 bits (52), Expect = 1.0
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +2

Query: 779 YFWSTSLTPSYMVFILGSIFCNFKVSASEN*VCSSVC 889
           +F S  L  SY V    SI CN K    +  +C  +C
Sbjct: 10  FFLSVILITSYFVTPTMSIKCNCKRHVIKPHICRKIC 46


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 13/68 (19%), Positives = 30/68 (44%)
 Frame = -3

Query: 204 QRYKADISTEQRDALLELLRKQYHPTITQEIRRELQQAQCRDXEVNEEATNMMSVE*YYH 25
           +RY      EQR    E   ++Y  T  +  R  +++ + R+ ++    +N       Y+
Sbjct: 270 KRYSRSREREQRSYKNENSYRKYRETSKERSRDRIERERSREPKIISSLSNNTIHNNNYN 329

Query: 24  ECMYKKML 1
           + +Y  ++
Sbjct: 330 KKLYYNII 337


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 189 LPYNAVQTLIEL-DAIIQVIHEPQIETSKNEKQQHPQLYMEEHIF 320
           LP  A + LIE  DAI  +I E  IET+  EK+   +    E IF
Sbjct: 263 LPTCAYKQLIESEDAIYNIISE-IIETTIQEKRDDAKDESVEAIF 306


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 497 PFIKAPGLNKAFLNAWYKW 553
           PF+K P    AFL++ + W
Sbjct: 396 PFLKNPDAIPAFLSSLFLW 414


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 816 TMYEGVRDVLQKYRSGKLPKAFKM 745
           TMY G+ D +QK  +   P   K+
Sbjct: 79  TMYPGIADRMQKEITALAPSTMKI 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,459
Number of Sequences: 438
Number of extensions: 5499
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31202262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)