Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1h01f
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|c...    36   0.005
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    28   1.1  
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    27   3.3  
SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p...    27   3.3  
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|...    26   4.4  
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    26   4.4  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    26   4.4  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    26   4.4  
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    26   5.8  
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi...    26   5.8  
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    26   5.8  

>SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 449

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 23/72 (31%), Positives = 35/72 (48%)
 Frame = +3

Query: 165 MGKVKKLKPSQVGKNLALADQIESGNSVKIKNRTKDRNRHDEDDEFVKADLSKKILKTAR 344
           M K  K K         +A+  ESG   +  ++ K     +  + F+ A  SKKIL+ AR
Sbjct: 1   MPKAPKTKLHHAPLYKDIAESSESGVLRQKPSKQKKSKESNTGNGFLDAKTSKKILQLAR 60

Query: 345 RQQAELEDNEIG 380
            Q+ EL++ E G
Sbjct: 61  EQKEELDEEENG 72


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 16/97 (16%)
 Frame = +3

Query: 147 HLVETN-MGKVKKLKPSQ-VGKNLALADQIESG-NSVKIKNRT-----KDRNRHDEDDEF 302
           +L+E+N +  V+++ P   +G   A  ++  S  N VKI   T      D    DEDD+ 
Sbjct: 92  NLIESNSLDNVQEINPQNTIGDKSAHTEEESSNDNLVKITAGTIISDIMDEPVVDEDDKL 151

Query: 303 VKADLSKKILKTARR-------QQAELEDN-EIGPSP 389
            + DLSK+ L+T  +        Q E+ DN E  P P
Sbjct: 152 SEEDLSKEDLETTLKGDENYSSSQKEIYDNDETIPKP 188


>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -2

Query: 159 FQLNGQ*GNF*QTPQFS*---YYIQKPFLRNINCKRYQRF 49
           FQ   Q  NF  T Q+S    YY +  +LR +NC R ++F
Sbjct: 44  FQNEAQLNNFFDTLQYSKDVSYYFR--YLRKLNCSRVRKF 81


>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +3

Query: 123 FVKSFLTDHLVETNMGKVKKLKPSQVGKNLALADQIESGNSVKIKNRTK 269
           F+  ++ DH    N  K  K +   V  +  L   + +GN+  IKN  K
Sbjct: 91  FLSEYIEDHHSSCNGIKPPKPQFEPVANSQVLNKDVNNGNNAPIKNGVK 139


>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 288 EDDEFVKADLSKKILKTARRQQAELEDNEIGPSPAKHV 401
           ED   +K D+S ++  T  +Q   LE++    SPA ++
Sbjct: 338 EDASLLKTDISDELKNTFEKQIMNLEESVRAISPAANI 375


>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +3

Query: 108 KKTVVFVKSFLTDHLVETNMGKVKKLKPSQVGKNLALADQIESGNSVKI 254
           K T +   S + DHL+      ++++KPS++  +++ + + E G   KI
Sbjct: 94  KSTTIPNSSVVLDHLLNEGENTLEEVKPSEIHPHMSWSSKSE-GKMFKI 141


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 18/68 (26%), Positives = 34/68 (50%)
 Frame = +3

Query: 171 KVKKLKPSQVGKNLALADQIESGNSVKIKNRTKDRNRHDEDDEFVKADLSKKILKTARRQ 350
           K +K++     KNL LAD I   +  + +  T  R++ D      K + +++ L+  + +
Sbjct: 518 KKEKMEREMKNKNLELADMILERDRARHELETMHRSQRD------KQESTERELRLLQEK 571

Query: 351 QAELEDNE 374
            A LE N+
Sbjct: 572 AASLERNK 579


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = +3

Query: 141 TDHLVETNMGKVKKLKPSQVGKNLALADQIESGNSVKIKNRTKDRNRHDEDDEFVKADLS 320
           TD    T   K++  + +Q      +  + ES NSV ++NR  D  +  +       ++ 
Sbjct: 629 TDKSDNTLPKKIRNAQLAQYNFIFVVGAEEESTNSVNVRNR-DDPKKQSKGSTVAVEEVV 687

Query: 321 KKILK 335
           KK+LK
Sbjct: 688 KKLLK 692


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
 Frame = +3

Query: 126 VKSFLTDHLVETNMGKVKKLKPSQVGKNLALAD--QIESGNSVKIKNRTKDRNRHDEDDE 299
           VK   ++ +V+   G+ +K K  ++G ++  ++  Q++      I+N  K  N  D+   
Sbjct: 323 VKEGESNPVVKRKRGRPRKNK-LEIGNSVQTSEATQVKGAKKPAIRNAKKMSNEKDDSLN 381

Query: 300 FVKADLSKKILKTARR------QQAELEDNEIGPSPAKHVTL 407
                 S + +KT  R      +Q E ED  +G   +K   +
Sbjct: 382 SQSDSASGEFIKTIARNNLQEIKQVEREDTLVGVRRSKRTRI 423


>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
           Tom70|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/64 (23%), Positives = 29/64 (45%)
 Frame = +3

Query: 171 KVKKLKPSQVGKNLALADQIESGNSVKIKNRTKDRNRHDEDDEFVKADLSKKILKTARRQ 350
           K + LK S+ GK++  A    +    K KN+ K + +   D    K    + +    + +
Sbjct: 87  KEEDLKSSETGKDVETAAAAAAAAKKKKKNKKKVKAKKVGDSSVDKIATEESVKSMTKEE 146

Query: 351 QAEL 362
           +A+L
Sbjct: 147 RAKL 150


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/45 (28%), Positives = 28/45 (62%)
 Frame = +3

Query: 483 DNIEINEADEEALKLFKSSKTERVRTLADIIKEKITDKHTELQTQ 617
           DNIE++++DEE  K     +++   + +   ++++ D+ TEL +Q
Sbjct: 550 DNIELSDSDEEEEKATARKESDEKGSSS---QKELVDRMTELASQ 591


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,143,350
Number of Sequences: 5004
Number of extensions: 34704
Number of successful extensions: 124
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)