Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1h01f
(682 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0607 - 11183382-11183387,11183481-11183637,11184220-111842... 48 9e-06
10_08_0614 - 19238064-19238132,19238381-19238407,19238436-192385... 32 0.48
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 31 0.84
08_01_0280 + 2283046-2283532,2285406-2285629,2286630-2287271 30 2.0
03_03_0107 + 14504065-14504448,14504545-14504922,14506011-145066... 30 2.0
10_08_0423 + 17801221-17801416,17802239-17803212 29 2.6
08_02_1147 - 24688686-24689729,24689875-24690036,24690339-246903... 29 2.6
08_01_0359 + 3152483-3152857,3154493-3154855,3155133-3155211,315... 29 3.4
09_02_0207 - 5793848-5794276,5794523-5794645,5794742-5795250,579... 28 6.0
01_06_1257 - 35778078-35778299,35778952-35779069,35779294-357794... 28 6.0
12_01_0022 + 165056-165408,165477-165624,166248-166248,166305-16... 28 7.9
>09_02_0607 -
11183382-11183387,11183481-11183637,11184220-11184284,
11184397-11184469,11184759-11184905,11185515-11185562,
11185637-11185716,11186112-11186439,11186525-11186576,
11187397-11187523,11187613-11187990
Length = 486
Score = 47.6 bits (108), Expect = 9e-06
Identities = 45/156 (28%), Positives = 66/156 (42%), Gaps = 12/156 (7%)
Frame = +3
Query: 186 KPSQVGKNLAL-ADQIESGNSVKIKNRTKDRNRHDEDDEFVKADLSKKILKTARRQQAE- 359
+P Q + L L AD ++ K + + E++ + + LS KIL+ A QQ E
Sbjct: 14 QPKQQQQRLPLGADADAVADAAKRRRSGASKKHQAEEEASIPSSLSAKILREALTQQQEE 73
Query: 360 -LEDNE------IGPSPAKHVTLVXXXXXXXXXXXXXXXXX-LEPDTYYDN--IEINEAD 509
L D PSP+ + + + YD EI+E D
Sbjct: 74 SLADQRPAAAATAAPSPSFSFPVPKKDGEEDEDDDDVDEFDGFDAQSEYDGGVPEIDEED 133
Query: 510 EEALKLFKSSKTERVRTLADIIKEKITDKHTELQTQ 617
E+AL F S T R+L DII EKI +K E+ T+
Sbjct: 134 EKALAAFMSKDTSSKRSLGDIILEKIREKDAEISTE 169
>10_08_0614 -
19238064-19238132,19238381-19238407,19238436-19238510,
19238637-19239317,19239423-19239554,19239676-19239723,
19239828-19239878,19240015-19240134,19241121-19241261,
19241701-19241865,19241981-19242160,19242314-19242445,
19242536-19242643,19242779-19242883,19243217-19243321,
19243407-19243463,19243991-19244010,19244299-19244377,
19245021-19245080,19245562-19245615,19246535-19246600,
19246938-19246990,19247361-19247450,19248152-19248249,
19248348-19248721
Length = 1029
Score = 31.9 bits (69), Expect = 0.48
Identities = 16/64 (25%), Positives = 34/64 (53%)
Frame = +3
Query: 462 LEPDTYYDNIEINEADEEALKLFKSSKTERVRTLADIIKEKITDKHTELQTQFSDAETLK 641
L+ N+EINE E+ L+L + T + + ++ D ++LQ + +++E LK
Sbjct: 695 LQEQLQQKNVEINELQEKVLRLEQQLTTNTEASPEQCTEHELHDLKSKLQLKEAESEKLK 754
Query: 642 LQNI 653
+++
Sbjct: 755 YEHM 758
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 31.1 bits (67), Expect = 0.84
Identities = 12/52 (23%), Positives = 31/52 (59%)
Frame = +3
Query: 222 DQIESGNSVKIKNRTKDRNRHDEDDEFVKADLSKKILKTARRQQAELEDNEI 377
++IE+G+ K K R +D+ + D+D E + + ++ + R ++ +++ E+
Sbjct: 437 ERIETGSPDKRKERERDKEKRDKDKELERHERERERERVRRDREKDIKYKEV 488
>08_01_0280 + 2283046-2283532,2285406-2285629,2286630-2287271
Length = 450
Score = 29.9 bits (64), Expect = 2.0
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Frame = +3
Query: 177 KKLKPSQVG--KNLALADQIESGNSVKI-KNRTKDRNRHDEDDEFVKADLSKKILKTARR 347
++ + S+VG K+ +L + +VKI K +TK R+ + +D D+S++ L +
Sbjct: 29 RETRRSEVGLEKSSSLPPPLPK-EAVKIDKKKTKKRSDYSIEDILKILDMSEEELAVVKE 87
Query: 348 QQAELEDNEIGPSPAKHVTLV 410
+ AE+E E +P T+V
Sbjct: 88 EWAEMEAKEKEEAPKVKETMV 108
>03_03_0107 +
14504065-14504448,14504545-14504922,14506011-14506619,
14507110-14507237,14507829-14507832
Length = 500
Score = 29.9 bits (64), Expect = 2.0
Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 4/124 (3%)
Frame = +3
Query: 246 VKIKNRTKDRNRHDEDDEFVKADLSKKILKTARRQQAELEDNEIGPSP-AKHVTLVXXXX 422
V + NR + D+DDE + ++ + + ++ E ED+E P P + +
Sbjct: 197 VIMANRAEGDEEEDDDDE--EEEVMDGVFLSDVEEEEEFEDDEGEPKPRVRRLLDEQFDL 254
Query: 423 XXXXXXXXXXXXXLEPDTYYDNIEINEADEEALKLFKS---SKTERVRTLADIIKEKITD 593
+P E+ + LKLF S S TE RT AD ++ K+
Sbjct: 255 LALEEYGDSDDDDDDPGVRNGECELPTEVIDELKLFHSQNVSVTEEYRTPADFVRRKLDS 314
Query: 594 KHTE 605
E
Sbjct: 315 STAE 318
>10_08_0423 + 17801221-17801416,17802239-17803212
Length = 389
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/58 (29%), Positives = 32/58 (55%)
Frame = +3
Query: 471 DTYYDNIEINEADEEALKLFKSSKTERVRTLADIIKEKITDKHTELQTQFSDAETLKL 644
+TY + ++ A KL + KT VRT ++ +++ D+H EL+T+ + T +L
Sbjct: 45 ETYLQDTICDDPATRA-KLERLCKTTTVRTRYTVMSKELLDEHPELRTEGTPTLTPRL 101
>08_02_1147 -
24688686-24689729,24689875-24690036,24690339-24690368,
24690713-24690860,24691302-24691489
Length = 523
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 225 QIESGNSVKIKNRTKDRNRHDEDDEFVKADLSKKILKTARRQQAELEDNE 374
Q E K K KDR RHD +DE + + +R+Q+E+ ++
Sbjct: 278 QREDSEDDKPKKSRKDRRRHDSEDEEPRRKHQRSEDDEPKRRQSEVSGDD 327
>08_01_0359 +
3152483-3152857,3154493-3154855,3155133-3155211,
3155473-3155879,3156342-3156497,3156728-3156895,
3156991-3157131,3157739-3157966,3158063-3158176,
3158293-3158448
Length = 728
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 258 NRTKDRNRHDEDDEFVKADLSKKILKTARRQQAELEDN 371
+R + RH E+ E+ KA+ K L+ +R ++L+DN
Sbjct: 647 SRLRPDQRHLENGEYEKANAEKLRLERRQRMSSKLQDN 684
>09_02_0207 -
5793848-5794276,5794523-5794645,5794742-5795250,
5795543-5795648,5795798-5795959,5796094-5796144,
5796229-5796394,5796624-5797093
Length = 671
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 379 VRLQQNMSLLCQALKIKDQIVQIQRRMTWNLTHTMITLKSTKQMKK 516
V Q N+S L ++K+Q ++ +RR L + T +T+ +K+
Sbjct: 465 VNFQNNVSSLNATRRLKEQQLEAERREIQELKQALATASATQSVKE 510
>01_06_1257 -
35778078-35778299,35778952-35779069,35779294-35779433,
35779763-35779864,35779971-35780051,35780333-35780402,
35781053-35781114,35781789-35782183,35782303-35782386,
35782949-35783041,35783144-35783195,35783310-35783376,
35783492-35783550,35784209-35784256,35784927-35785040,
35785162-35785335,35785417-35785944,35786025-35786094,
35786668-35786711
Length = 840
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = +3
Query: 153 VETNMGKVKKLKPSQVGKNLALADQIESGNSVKIKNRTKDRNRHDEDDEF 302
+ ++G + ++ +V K + AD+ + N ++ N + + D DDEF
Sbjct: 110 IRPSLGHIGEMMSLRVKKKQSSADKENAANELQSANNEEIKPSEDSDDEF 159
>12_01_0022 +
165056-165408,165477-165624,166248-166248,166305-166602,
166819-167387,167554-168377
Length = 730
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/43 (25%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +3
Query: 252 IKNRTKDRNRHDEDDEFVKADLSKKILKTARRQQA-ELEDNEI 377
++ + ++ + +EDDE ++ ++ ++ R+QQ E D EI
Sbjct: 131 LRRKAREITKEEEDDERLRGEMVSRVRARIRKQQPDETNDEEI 173
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,467,111
Number of Sequences: 37544
Number of extensions: 183338
Number of successful extensions: 584
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -