Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1h01f
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    23   3.6  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    22   4.7  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    22   4.7  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   8.2  

>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +3

Query: 516 ALKLFKSSKTERVRTLADIIKEKITDKHTELQTQF 620
           A KLF      +V      +K  + DKH E Q ++
Sbjct: 2   AKKLFTCQLCGKVLCSKASLKRHVADKHAERQEEY 36


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 102 SIKKTVVFVKSFLTDHLVETNMGKVKKLKPSQVGKNLALADQ 227
           +IK  ++    F+     ET  G+  + + S    N+AL+DQ
Sbjct: 4   AIKALLIVCALFIYTVTAETEEGQSGRSRVSDEQLNMALSDQ 45


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 102 SIKKTVVFVKSFLTDHLVETNMGKVKKLKPSQVGKNLALADQ 227
           +IK  ++    F+     ET  G+  + + S    N+AL+DQ
Sbjct: 4   AIKALLIVCALFIYTVTAETEEGQSGRSRVSDEQLNMALSDQ 45


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 178 LTLPILVSTKWSVRKLLTNTTVFLILHTKTVPAEH 74
           +T  + V  +W+  KL  N   +  + T  VP+EH
Sbjct: 67  MTTNVWVEQEWNDYKLKWNPDDYGGVDTLHVPSEH 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,496
Number of Sequences: 438
Number of extensions: 2335
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)