Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1g23f
(645 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 30 1.8
01_06_0703 - 31326790-31326894,31327015-31327126,31327324-313274... 29 4.2
04_04_1361 - 32890775-32890837,32891071-32891239,32891285-328914... 28 5.5
11_05_0090 + 18979316-18981070 28 7.3
07_01_1034 - 8962703-8962748,8962831-8962991,8963068-8963905,896... 28 7.3
03_02_0371 + 7858170-7859624 28 7.3
01_05_0080 - 17957276-17957676,17957810-17957921,17958001-179581... 28 7.3
>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +1
Query: 415 TYRQDGIEFHQPEGNLAISSNVIPFAPTFHSFHRHRLLLTRLIPSNLQTLGNTTVNSVLK 594
TYR G + H P +L P+A + + H+ +L L+P L + N ++ + L
Sbjct: 2501 TYRAAGAQPHAPSPHLQQLRMPSPYATSHGNQHQRPSILASLLPFVLPSSSNPSLTAPLS 2560
Query: 595 C-TLHHMLSTTVDA 633
T+ H S ++A
Sbjct: 2561 LNTVVHRTSGPLNA 2574
>01_06_0703 -
31326790-31326894,31327015-31327126,31327324-31327445,
31327573-31327658,31327783-31327901,31327991-31328053,
31328142-31328221,31328801-31328921,31329040-31329125,
31329318-31329413,31329510-31329584,31329869-31330210
Length = 468
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 242 RSPVSHQSYGNAILIPYC*TETISLRPQF--LFSLTSFVESKIILM*TW 382
R+P H +YG LI C +E + RP F + S+++++I W
Sbjct: 385 RAPPKHYAYGLRELIEQCWSENPASRPDFRTIIEQLSYIQNEISQRNRW 433
>04_04_1361 -
32890775-32890837,32891071-32891239,32891285-32891402,
32891760-32891861,32891930-32892000,32892315-32892532,
32892653-32893048,32893822-32893937,32894021-32894087
Length = 439
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -3
Query: 310 DCFCLTVWDQNSIPVALVRYWTAPLVVRG*YPQQLP*RMVAN 185
D FC ++D + AL WT PLV +P MVA+
Sbjct: 360 DYFCCAIFDMELLVRALSVVWTTPLVATLGMSLTIPLAMVAD 401
>11_05_0090 + 18979316-18981070
Length = 584
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = +1
Query: 358 EDNPDVNMDLRQLSALLLHTYRQD----GIEFHQPEGNLAISSNVIPF 489
+D DV+ D+ LS + H R GI+FH E N I +I F
Sbjct: 467 KDLDDVSGDIHGLSGRIFHCLRSSLRRVGIQFHLDEHNDCIGVRLIKF 514
>07_01_1034 -
8962703-8962748,8962831-8962991,8963068-8963905,
8963991-8964128,8964206-8964355,8964436-8964683,
8964825-8964953,8965735-8965960,8966909-8966975,
8967488-8967551,8968902-8969000,8969074-8969157,
8969240-8969321,8969412-8969460,8969664-8969769,
8970650-8970734,8970814-8970917,8970994-8971109,
8971187-8971373,8972005-8972113,8972633-8972761,
8973365-8973449,8973812-8973947,8974078-8974230,
8974488-8974634,8974801-8974941,8975580-8975903
Length = 1400
Score = 27.9 bits (59), Expect = 7.3
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = -3
Query: 514 DERSGRLVQTVSHSKIWLNYLPAGEILYHLG-GTCEEVTRTVVLSPCS--HQDYLRFYE* 344
DE+SG L + IWL YLP+ ++L + G + T PCS + D + ++
Sbjct: 125 DEKSG-LAPDLESKHIWLKYLPSDKVLPLVNKGNFYQNGDTGPCGPCSQIYFDQIGHHD- 182
Query: 343 CQ*EQELWSEGDCFCLTVWD 284
L + D C+ +W+
Sbjct: 183 ---VASLLNNDDPGCIEIWN 199
>03_02_0371 + 7858170-7859624
Length = 484
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/55 (30%), Positives = 21/55 (38%)
Frame = +1
Query: 454 GNLAISSNVIPFAPTFHSFHRHRLLLTRLIPSNLQTLGNTTVNSVLKCTLHHMLS 618
G + P FH FH HRL PS L SV C+L +L+
Sbjct: 10 GTAGAAGGAASVKPQFHHFHHHRLATRHHHPSPTSLLSKLAFWSV--CSLSLLLA 62
>01_05_0080 -
17957276-17957676,17957810-17957921,17958001-17958126,
17958199-17958331,17960069-17960193,17960314-17960409,
17960430-17960621,17960694-17960800,17961318-17961426,
17961538-17961624,17963017-17963103,17964254-17964379
Length = 566
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 271 ECYFDPILLNRNNLPPTTIPVLIDIIRRIEDNPDVNMDL 387
+C +D + L N L P+T P+L R + +NP V + L
Sbjct: 401 KCLYDRLKLFPNLLSPSTRPLLRSNKRVVTNNPSVKVRL 439
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,655,526
Number of Sequences: 37544
Number of extensions: 362724
Number of successful extensions: 715
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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