Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1g23f
(645 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT011094-1|AAR82760.1| 870|Drosophila melanogaster RE31380p pro... 108 7e-24
AE013599-4028|AAM68331.1| 863|Drosophila melanogaster CG9380-PB... 108 7e-24
AE013599-4027|ABI31116.1| 873|Drosophila melanogaster CG9380-PC... 108 7e-24
BT012468-1|AAS93739.1| 231|Drosophila melanogaster RE40519p pro... 30 2.3
AF132555-1|AAD27854.2| 256|Drosophila melanogaster GM07659p pro... 30 2.3
AF132154-1|AAD34742.1| 216|Drosophila melanogaster unknown prot... 30 2.3
AE013599-3205|AAF46726.1| 216|Drosophila melanogaster CG9847-PA... 30 2.3
AE013599-3204|AAM70900.1| 231|Drosophila melanogaster CG9847-PB... 30 2.3
BT011558-1|AAS15694.1| 206|Drosophila melanogaster AT26258p pro... 30 3.1
AE014134-251|AAN10469.1| 194|Drosophila melanogaster CG14346-PB... 30 3.1
AE014134-250|AAF51377.1| 206|Drosophila melanogaster CG14346-PA... 30 3.1
AE014297-2142|AAF55270.1| 1732|Drosophila melanogaster CG10185-P... 29 7.1
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 28 9.4
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 28 9.4
BT001270-1|AAN71026.1| 623|Drosophila melanogaster AT04551p pro... 28 9.4
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 28 9.4
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 28 9.4
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 28 9.4
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 28 9.4
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 28 9.4
AE013599-3412|AAF46861.2| 1301|Drosophila melanogaster CG4294-PA... 28 9.4
>BT011094-1|AAR82760.1| 870|Drosophila melanogaster RE31380p
protein.
Length = 870
Score = 108 bits (259), Expect = 7e-24
Identities = 57/150 (38%), Positives = 86/150 (57%), Gaps = 4/150 (2%)
Frame = +1
Query: 208 AVVGTTHGQLTAQSSIAPELRECYFDPILLNRNNLPPTTIPVLIDIIRRIEDN----PDV 375
A++ T Q A I P L ECY +NR+N P + LI +I ++E++ V
Sbjct: 46 ALILKTKAQENAMLQIPPSLVECYNTSYFMNRDNRLPANMDTLISLIEKVENSYAASSGV 105
Query: 376 NMDLRQLSALLLHTYRQDGIEFHQPEGNLAISSNVIPFAPTFHSFHRHRLLLTRLIPSNL 555
D+R +S LLH +RQDGI+ + ++ VIP++PT F + ++LL+RLIP N
Sbjct: 106 QADIRTVSVALLHRFRQDGIK---KAAGINVADGVIPYSPTGFQFPKLKILLSRLIPGNA 162
Query: 556 QTLGNTTVNSVLKCTLHHMLSTTVDARLRG 645
T N+++ V +C+LH MLS+T D R RG
Sbjct: 163 NTFPNSSLTRVERCSLHFMLSSTFDTRTRG 192
>AE013599-4028|AAM68331.1| 863|Drosophila melanogaster CG9380-PB,
isoform B protein.
Length = 863
Score = 108 bits (259), Expect = 7e-24
Identities = 57/150 (38%), Positives = 86/150 (57%), Gaps = 4/150 (2%)
Frame = +1
Query: 208 AVVGTTHGQLTAQSSIAPELRECYFDPILLNRNNLPPTTIPVLIDIIRRIEDN----PDV 375
A++ T Q A I P L ECY +NR+N P + LI +I ++E++ V
Sbjct: 39 ALILKTKAQENAMLQIPPSLVECYNTSYFMNRDNRLPANMDTLISLIEKVENSYAASSGV 98
Query: 376 NMDLRQLSALLLHTYRQDGIEFHQPEGNLAISSNVIPFAPTFHSFHRHRLLLTRLIPSNL 555
D+R +S LLH +RQDGI+ + ++ VIP++PT F + ++LL+RLIP N
Sbjct: 99 QADIRTVSVALLHRFRQDGIK---KAAGINVADGVIPYSPTGFQFPKLKILLSRLIPGNA 155
Query: 556 QTLGNTTVNSVLKCTLHHMLSTTVDARLRG 645
T N+++ V +C+LH MLS+T D R RG
Sbjct: 156 NTFPNSSLTRVERCSLHFMLSSTFDTRTRG 185
>AE013599-4027|ABI31116.1| 873|Drosophila melanogaster CG9380-PC,
isoform C protein.
Length = 873
Score = 108 bits (259), Expect = 7e-24
Identities = 57/150 (38%), Positives = 86/150 (57%), Gaps = 4/150 (2%)
Frame = +1
Query: 208 AVVGTTHGQLTAQSSIAPELRECYFDPILLNRNNLPPTTIPVLIDIIRRIEDN----PDV 375
A++ T Q A I P L ECY +NR+N P + LI +I ++E++ V
Sbjct: 39 ALILKTKAQENAMLQIPPSLVECYNTSYFMNRDNRLPANMDTLISLIEKVENSYAASSGV 98
Query: 376 NMDLRQLSALLLHTYRQDGIEFHQPEGNLAISSNVIPFAPTFHSFHRHRLLLTRLIPSNL 555
D+R +S LLH +RQDGI+ + ++ VIP++PT F + ++LL+RLIP N
Sbjct: 99 QADIRTVSVALLHRFRQDGIK---KAAGINVADGVIPYSPTGFQFPKLKILLSRLIPGNA 155
Query: 556 QTLGNTTVNSVLKCTLHHMLSTTVDARLRG 645
T N+++ V +C+LH MLS+T D R RG
Sbjct: 156 NTFPNSSLTRVERCSLHFMLSSTFDTRTRG 185
>BT012468-1|AAS93739.1| 231|Drosophila melanogaster RE40519p
protein.
Length = 231
Score = 30.3 bits (65), Expect = 2.3
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 250 SIAPELRECYFDPILLNRNNLPPTTIPVLIDIIRRIEDNPDVNMDLRQLSALL 408
++ P FD L+N N PPTT ++ + I+DN D + ++S L
Sbjct: 130 NVIPPKATLLFDVELINIGNAPPTT-----NVFKEIDDNADKQLSREEVSEYL 177
>AF132555-1|AAD27854.2| 256|Drosophila melanogaster GM07659p
protein.
Length = 256
Score = 30.3 bits (65), Expect = 2.3
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 250 SIAPELRECYFDPILLNRNNLPPTTIPVLIDIIRRIEDNPDVNMDLRQLSALL 408
++ P FD L+N N PPTT ++ + I+DN D + ++S L
Sbjct: 155 NVIPPKATLLFDVELINIGNAPPTT-----NVFKEIDDNADKQLSREEVSEYL 202
>AF132154-1|AAD34742.1| 216|Drosophila melanogaster unknown
protein.
Length = 216
Score = 30.3 bits (65), Expect = 2.3
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 250 SIAPELRECYFDPILLNRNNLPPTTIPVLIDIIRRIEDNPDVNMDLRQLSALL 408
++ P FD L+N N PPTT ++ + I+DN D + ++S L
Sbjct: 115 NVIPPKATLLFDVELINIGNAPPTT-----NVFKEIDDNADKQLSREEVSEYL 162
>AE013599-3205|AAF46726.1| 216|Drosophila melanogaster CG9847-PA,
isoform A protein.
Length = 216
Score = 30.3 bits (65), Expect = 2.3
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 250 SIAPELRECYFDPILLNRNNLPPTTIPVLIDIIRRIEDNPDVNMDLRQLSALL 408
++ P FD L+N N PPTT ++ + I+DN D + ++S L
Sbjct: 115 NVIPPKATLLFDVELINIGNAPPTT-----NVFKEIDDNADKQLSREEVSEYL 162
>AE013599-3204|AAM70900.1| 231|Drosophila melanogaster CG9847-PB,
isoform B protein.
Length = 231
Score = 30.3 bits (65), Expect = 2.3
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 250 SIAPELRECYFDPILLNRNNLPPTTIPVLIDIIRRIEDNPDVNMDLRQLSALL 408
++ P FD L+N N PPTT ++ + I+DN D + ++S L
Sbjct: 130 NVIPPKATLLFDVELINIGNAPPTT-----NVFKEIDDNADKQLSREEVSEYL 177
>BT011558-1|AAS15694.1| 206|Drosophila melanogaster AT26258p
protein.
Length = 206
Score = 29.9 bits (64), Expect = 3.1
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 490 APTFHSFHRHRLLLTRLIPSNLQTLGNTTVNSVLK 594
+PT H FHR LL + P ++Q+L + + VL+
Sbjct: 161 SPTSHQFHRLYNLLRNIQPDDVQSLSGSPLPDVLR 195
>AE014134-251|AAN10469.1| 194|Drosophila melanogaster CG14346-PB,
isoform B protein.
Length = 194
Score = 29.9 bits (64), Expect = 3.1
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 490 APTFHSFHRHRLLLTRLIPSNLQTLGNTTVNSVLK 594
+PT H FHR LL + P ++Q+L + + VL+
Sbjct: 149 SPTSHQFHRLYNLLRNIQPDDVQSLSGSPLPDVLR 183
>AE014134-250|AAF51377.1| 206|Drosophila melanogaster CG14346-PA,
isoform A protein.
Length = 206
Score = 29.9 bits (64), Expect = 3.1
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 490 APTFHSFHRHRLLLTRLIPSNLQTLGNTTVNSVLK 594
+PT H FHR LL + P ++Q+L + + VL+
Sbjct: 161 SPTSHQFHRLYNLLRNIQPDDVQSLSGSPLPDVLR 195
>AE014297-2142|AAF55270.1| 1732|Drosophila melanogaster CG10185-PA
protein.
Length = 1732
Score = 28.7 bits (61), Expect = 7.1
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 525 QPVTMKGVEGWCKRYHIRRYG*ITFRLVK 439
QP+ +G KRY++R++G + F V+
Sbjct: 774 QPLVFSSKDGLSKRYNLRKFGELPFHFVR 802
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 28.3 bits (60), Expect = 9.4
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +3
Query: 402 VTSSHVP-PRWYRISPAGR*FSHIFECDTVCTNLPLLSSSQAATNKTHT**FADTWKYNC 578
+ SS +P P YR SP R + DT+ + L+++ N+ + F+D W
Sbjct: 699 IFSSDMPLPYIYRPSPTERIMLSTYADDTIVLSSDTLATAATRNNENYLKSFSD-WADKW 757
Query: 579 *FSAQVHSTSHVV 617
S T HV+
Sbjct: 758 GISVNAAKTGHVI 770
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 28.3 bits (60), Expect = 9.4
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +3
Query: 402 VTSSHVP-PRWYRISPAGR*FSHIFECDTVCTNLPLLSSSQAATNKTHT**FADTWKYNC 578
+ SS +P P Y SP R + DT+ + +L+++ N+ + F+D W
Sbjct: 583 IFSSDMPLPHIYHPSPTERIMLSTYADDTIVLSSDILATAATRNNENYLKTFSD-WADKW 641
Query: 579 *FSAQVHSTSHVV 617
S T HV+
Sbjct: 642 GISVNAAKTGHVI 654
>BT001270-1|AAN71026.1| 623|Drosophila melanogaster AT04551p
protein.
Length = 623
Score = 28.3 bits (60), Expect = 9.4
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 304 NNLPPTTIPVLIDIIRRIEDNPDVNMDLR 390
NNLPP ++P++ID +D D+N D R
Sbjct: 337 NNLPPVSVPIVID----EDDELDLNTDNR 361
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 28.3 bits (60), Expect = 9.4
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +3
Query: 402 VTSSHVP-PRWYRISPAGR*FSHIFECDTVCTNLPLLSSSQAATNKTHT**FADTWKYNC 578
+ SS +P P YR SP R + DT+ + L+++ N+ + F+D W
Sbjct: 711 IFSSDMPLPYIYRPSPTQRIMLSTYADDTIVLSSDTLATAATRNNENYLKTFSD-WADKW 769
Query: 579 *FSAQVHSTSHVV 617
S T HV+
Sbjct: 770 GISVNAAKTGHVI 782
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 28.3 bits (60), Expect = 9.4
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +3
Query: 402 VTSSHVP-PRWYRISPAGR*FSHIFECDTVCTNLPLLSSSQAATNKTHT**FADTWKYNC 578
+ SS +P P Y SP R + DT+ + +L+++ N+ + F+D W
Sbjct: 699 IFSSDMPLPHIYHPSPTERIMLSTYADDTIVLSSDILATAATRNNENYLKTFSD-WADKW 757
Query: 579 *FSAQVHSTSHVV 617
S T HV+
Sbjct: 758 GISVNAAKTGHVI 770
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 28.3 bits (60), Expect = 9.4
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +3
Query: 402 VTSSHVP-PRWYRISPAGR*FSHIFECDTVCTNLPLLSSSQAATNKTHT**FADTWKYNC 578
+ SS +P P Y SP R + DT+ + +L+++ N+ + F+D W
Sbjct: 699 IFSSDMPLPHIYHPSPTERIMLSTYADDTIVLSSDILATAATRNNENYLKTFSD-WADKW 757
Query: 579 *FSAQVHSTSHVV 617
S T HV+
Sbjct: 758 GISVNAAKTGHVI 770
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 28.3 bits (60), Expect = 9.4
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +3
Query: 402 VTSSHVP-PRWYRISPAGR*FSHIFECDTVCTNLPLLSSSQAATNKTHT**FADTWKYNC 578
+ SS +P P Y SP R + DT+ + +L+++ N+ + F+D W
Sbjct: 661 IFSSDMPLPHIYHPSPTERIMLSTYADDTIVLSSDILATAATRNNENYLKTFSD-WADKW 719
Query: 579 *FSAQVHSTSHVV 617
S T HV+
Sbjct: 720 GISVNAAKTGHVI 732
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 28.3 bits (60), Expect = 9.4
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +3
Query: 402 VTSSHVP-PRWYRISPAGR*FSHIFECDTVCTNLPLLSSSQAATNKTHT**FADTWKYNC 578
+ SS +P P Y SP R + DT+ + +L+++ N+ + F+D W
Sbjct: 699 IFSSDMPLPHIYHPSPTERIMLSTYADDTIVLSSDILATAATRNNENYLKTFSD-WADKW 757
Query: 579 *FSAQVHSTSHVV 617
S T HV+
Sbjct: 758 GISVNAAKTGHVI 770
>AE013599-3412|AAF46861.2| 1301|Drosophila melanogaster CG4294-PA
protein.
Length = 1301
Score = 28.3 bits (60), Expect = 9.4
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 304 NNLPPTTIPVLIDIIRRIEDNPDVNMDLR 390
NNLPP ++P++ID +D D+N D R
Sbjct: 436 NNLPPVSVPIVID----EDDELDLNTDNR 460
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,129,310
Number of Sequences: 53049
Number of extensions: 634343
Number of successful extensions: 2046
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2040
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2724262200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -