Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1g16r
         (881 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    27   0.17 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   4.9  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   6.5  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   8.6  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 360 FYYPIYKIETIKYVFFVLFHMCVIYERRASSPSQRHV*LD 241
           FY P++ +  + Y  F      V+ ERRA S  + H   D
Sbjct: 211 FYIPLFVMIQVYYKIFCAARRIVLEERRAQSHLEAHCYFD 250


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 853 DEIAQETLEWIRKLTGEPANTSG 785
           D   +E LEW +   G  ANT G
Sbjct: 19  DTTQEEKLEWTKYPFGAEANTPG 41


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 129 IRLCLRVLTN*NVFFWIFLLLFPSISV 49
           I LC+ +L +  +FF +   + PS S+
Sbjct: 267 IALCINILLSQTMFFLLISEIIPSTSL 293


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -3

Query: 354 YPIYKIETIKYVFFVLFHMCVIYER 280
           +P+Y++ TI +    +  + V+Y R
Sbjct: 210 FPLYELSTIIFFLIPMLIILVVYTR 234


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 814 LTGEPANTSGDADNLYEVLKDG 749
           LTG P  T GD    Y ++  G
Sbjct: 559 LTGTPPFTGGDPMKTYNIILKG 580


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,519
Number of Sequences: 438
Number of extensions: 5120
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)