Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1g15f
(691 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 35 0.010
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.16
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 27 2.6
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 27 2.6
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 26 4.5
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2... 26 4.5
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 26 5.9
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po... 26 5.9
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|... 25 7.8
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch... 25 7.8
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 35.1 bits (77), Expect = 0.010
Identities = 25/82 (30%), Positives = 41/82 (50%)
Frame = +2
Query: 272 SAPWSASTPGWAHSTAASIRTGGSTIREAGLPRTWSAGSRGKGTPTHTPAHAQTDARTHK 451
SAP S S+P AH+ AS + ++ ++ P ++S+ S G PAHA + +
Sbjct: 395 SAPNSTSSPSMAHANGASFASQYPSLNKSIFPASYSS-SAEDGQNMQAPAHAYMQSSIYG 453
Query: 452 KLRTEVSETGGNHLML*QSLSI 517
+ + SE N L + S+SI
Sbjct: 454 VNQEQKSEYPSN-LSMQSSMSI 474
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 31.1 bits (67), Expect = 0.16
Identities = 27/92 (29%), Positives = 43/92 (46%)
Frame = +2
Query: 113 SSSPEERSGLTCRRFPS*WAPGTDAPPRVSSPPGTTGFSWAVVTGSARMLEGRSAPWSAS 292
SSS LT F S + + + P VSS +T S A + S+ L S S+S
Sbjct: 161 SSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSS 220
Query: 293 TPGWAHSTAASIRTGGSTIREAGLPRTWSAGS 388
+P S+++S S++ + +P T S+ S
Sbjct: 221 SP----SSSSSSTLTSSSLSTSSIPSTSSSSS 248
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 167 WAPGT-DAPPRVSSPPGTTGFSWAVVTGSARMLEGRSAPWSASTPG 301
WA DA SPP +T SW +T +A S W +ST G
Sbjct: 115 WAAAAMDAAEANFSPPNSTEHSWLELTQAA--FNRMSGRWDSSTCG 158
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 299 GWAHSTAASIRTGGSTIREAGLPRTWSAGSRGKGTPTHTPAHAQTDARTHKKL 457
G +HS + I+ S I++ PR +S+ G+ + A+ +AR K+
Sbjct: 825 GASHSPSEEIKDDASDIQQKRRPRAYSSSFTPSGSQVNFGEFAEENARLKPKV 877
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 26.2 bits (55), Expect = 4.5
Identities = 22/74 (29%), Positives = 30/74 (40%)
Frame = +2
Query: 242 TGSARMLEGRSAPWSASTPGWAHSTAASIRTGGSTIREAGLPRTWSAGSRGKGTPTHTPA 421
TGSA +S ++S G AA+ GST +++ G T T TPA
Sbjct: 111 TGSANSTGDKSKNTASSATG-----AATTNPSGSTFNFGSSNNSFNFGKPASTTNTTTPA 165
Query: 422 HAQTDARTHKKLRT 463
A T + K T
Sbjct: 166 AASTGSLFGKPAAT 179
>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 825
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 216 VPGGDETRGGASVPGAHHEG 157
+PGG + A VPGA HEG
Sbjct: 169 LPGGFPSHVNAEVPGAIHEG 188
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 25.8 bits (54), Expect = 5.9
Identities = 23/94 (24%), Positives = 32/94 (34%)
Frame = +2
Query: 140 LTCRRFPS*WAPGTDAPPRVSSPPGTTGFSWAVVTGSARMLEGRSAPWSASTPGWAHSTA 319
+ CR S D P R PP + + L G SA S +
Sbjct: 334 IVCRHCGSIGHIARDCPVRDQQPPMADSTADREYQSLMQELGGGSA---ISNGNGEPQKS 390
Query: 320 ASIRTGGSTIREAGLPRTWSAGSRGKGTPTHTPA 421
G+ +AG P W+A S + T +PA
Sbjct: 391 IEFSESGAASPQAGHPPPWAAASTSVSSSTSSPA 424
>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 335 GGSTIREAGLPRTWSAGSRGKGTPTHTPAHAQTDA 439
G + E G PR SA S GK T HA+ +A
Sbjct: 243 GATNCNEGGCPRCNSASSCGKELDTCLCLHAEENA 277
>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 330
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 621 MLQCVLSYPYPVTLISVGXWTHI 689
M + +YP PVTL++ G T+I
Sbjct: 122 MYTTISNYPEPVTLVATGPLTNI 144
>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/65 (23%), Positives = 24/65 (36%)
Frame = -2
Query: 339 PPVLIDAAVEWAHPGVLADQGADLPSSIRALPVTTAHEKPVVPGGDETRGGASVPGAHHE 160
P V + V ++ P A L ++LP T H++ + HH+
Sbjct: 116 PAVNLTNQVAFSAPQTTASSNTQLTQQQQSLPQTNEHQR----ARTHSNANNHFTKTHHQ 171
Query: 159 GNRRH 145
G R H
Sbjct: 172 GQRSH 176
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,513,609
Number of Sequences: 5004
Number of extensions: 46769
Number of successful extensions: 136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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