Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1g15f
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70307-10|CAA94328.1|  276|Caenorhabditis elegans Hypothetical p...    30   1.4  
U80441-8|AAB37656.1|  284|Caenorhabditis elegans Dumpy : shorter...    29   2.4  
Z70208-2|CAA94136.1|  304|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical ...    29   4.1  
U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AF022985-10|AAB69961.1|  325|Caenorhabditis elegans Collagen pro...    28   5.5  
Z71177-3|CAA94869.1|  325|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AF077544-1|AAK39241.2|  231|Caenorhabditis elegans Hypothetical ...    28   7.2  
AC024811-5|AAF60775.1|  285|Caenorhabditis elegans Collagen prot...    28   7.2  
Z81094-7|CAB03153.2|  960|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>Z70307-10|CAA94328.1|  276|Caenorhabditis elegans Hypothetical
           protein C39E9.9 protein.
          Length = 276

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
 Frame = +2

Query: 173 PGTDAPPRVSSPPGTTGF-SWAVVTGSARMLEGRSAPWSASTPGWAHSTAASIRTGGSTI 349
           PG D  P    PPG  G  ++ V       +EG   P  A   G         R G S I
Sbjct: 138 PGPDGEPGEQGPPGPPGVDNFEVGHDGPPGVEGE--PGDAGDQGEDGEPGVDGRPGASGI 195

Query: 350 REAGLP 367
           RE G+P
Sbjct: 196 REIGMP 201


>U80441-8|AAB37656.1|  284|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 5 protein.
          Length = 284

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
 Frame = +2

Query: 173 PGTDAPPRVSSPP---GTTGFSWAVVTGSARMLEGRSAPWSASTPGWAHSTAASIRTG 337
           PG D  P ++ PP   G TG     V G   M   R  P +   PG    T A   TG
Sbjct: 187 PGQDGQPGLAGPPGRDGLTGKGQPGVAGRPGMPGPRGEPGNNGNPGEEGQTGAQGPTG 244


>Z70208-2|CAA94136.1|  304|Caenorhabditis elegans Hypothetical
           protein F54B11.2 protein.
          Length = 304

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/55 (34%), Positives = 22/55 (40%)
 Frame = +2

Query: 155 FPS*WAPGTDAPPRVSSPPGTTGFSWAVVTGSARMLEGRSAPWSASTPGWAHSTA 319
           +P   APG   PP  + PPG  G S     G+A    G   P  A  P     TA
Sbjct: 218 YPEPAAPGPAGPPGPAGPPGPDGASPTAAPGAAGP-PGPPGPAGAPGPDGNPGTA 271


>AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical
           protein Y51B11A.1 protein.
          Length = 1079

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 1/101 (0%)
 Frame = +2

Query: 179 TDAPPRVSS-PPGTTGFSWAVVTGSARMLEGRSAPWSASTPGWAHSTAASIRTGGSTIRE 355
           T AP   S+ PP ++       T +A       AP S++TP    +T A   T       
Sbjct: 78  TTAPETTSTEPPSSSTTPVQTTTTTAPETTSTEAPSSSTTPVQTTTTTAPETTSTEPPSS 137

Query: 356 AGLPRTWSAGSRGKGTPTHTPAHAQTDARTHKKLRTEVSET 478
           +  P   +  +  + T T  P+ + T  +T      E + T
Sbjct: 138 STSPVQTTTTTAPETTSTEAPSSSTTPVQTTTTTAPETTST 178



 Score = 28.3 bits (60), Expect = 5.5
 Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 1/101 (0%)
 Frame = +2

Query: 179 TDAPPRVSS-PPGTTGFSWAVVTGSARMLEGRSAPWSASTPGWAHSTAASIRTGGSTIRE 355
           T AP   S+ PP ++       T +A       AP S++TP    +T A   T       
Sbjct: 124 TTAPETTSTEPPSSSTSPVQTTTTTAPETTSTEAPSSSTTPVQTTTTTAPETTSTEPPSS 183

Query: 356 AGLPRTWSAGSRGKGTPTHTPAHAQTDARTHKKLRTEVSET 478
           +  P   +  +  + T T  P+ + T  +T      E + T
Sbjct: 184 STSPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTST 224



 Score = 27.5 bits (58), Expect = 9.6
 Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 1/101 (0%)
 Frame = +2

Query: 179 TDAPPRVSS-PPGTTGFSWAVVTGSARMLEGRSAPWSASTPGWAHSTAASIRTGGSTIRE 355
           T AP   S+ PP ++       T +A        P S++TP    +T A   T       
Sbjct: 170 TTAPETTSTEPPSSSTSPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSS 229

Query: 356 AGLPRTWSAGSRGKGTPTHTPAHAQTDARTHKKLRTEVSET 478
           +  P   +  +  + T T +P+ + T  +T      E + T
Sbjct: 230 STTPVQTTTTTAPETTSTESPSSSTTPVQTTTTTAPETTST 270



 Score = 27.5 bits (58), Expect = 9.6
 Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 1/101 (0%)
 Frame = +2

Query: 179 TDAPPRVSS-PPGTTGFSWAVVTGSARMLEGRSAPWSASTPGWAHSTAASIRTGGSTIRE 355
           T AP   S+ PP ++       T +A        P S++TP    +T A   T   +   
Sbjct: 193 TTAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTESPSS 252

Query: 356 AGLPRTWSAGSRGKGTPTHTPAHAQTDARTHKKLRTEVSET 478
           +  P   +  +  + T T  P+ + T  +T      E + T
Sbjct: 253 STTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTST 293


>U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical
           protein K06A9.1c protein.
          Length = 825

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 22/75 (29%), Positives = 36/75 (48%)
 Frame = +2

Query: 185 APPRVSSPPGTTGFSWAVVTGSARMLEGRSAPWSASTPGWAHSTAASIRTGGSTIREAGL 364
           +P  +S+  G TG +  VV GS+      S+P  +S+P    ST     +G S+I  + +
Sbjct: 297 SPGTMSTVSGPTGSTVTVVPGSSTSPAPSSSPNPSSSPASTGSTITI--SGSSSIIVSTV 354

Query: 365 PRTWSAGSRGKGTPT 409
             +  +GS G    T
Sbjct: 355 SGSTVSGSTGTSQST 369



 Score = 28.3 bits (60), Expect = 5.5
 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
 Frame = +2

Query: 200 SSPPGTTGFSWAV---VTGSARMLEGRSAPWSASTPGWAHSTAASIRTGGSTIREAGLP- 367
           SSP G+TG +++V   VT  + +  G S    ++    + S+ +   +G ST+     P 
Sbjct: 440 SSPTGSTGSTFSVATEVTSQSTVPSGSSLGTQSTNSSPSPSSLSPSTSGMSTLTSEPSPS 499

Query: 368 RTWSAGSRGK-GTPTHTPAHAQTDARTHKKLRTEVSETGG 484
            T S+G++    TP+  P+ + +   +     T  S + G
Sbjct: 500 STQSSGAQSTLTTPSPNPSQSTSSLESSTSGATTSSGSAG 539


>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
           protein K06A9.1a protein.
          Length = 1032

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 22/75 (29%), Positives = 36/75 (48%)
 Frame = +2

Query: 185 APPRVSSPPGTTGFSWAVVTGSARMLEGRSAPWSASTPGWAHSTAASIRTGGSTIREAGL 364
           +P  +S+  G TG +  VV GS+      S+P  +S+P    ST     +G S+I  + +
Sbjct: 504 SPGTMSTVSGPTGSTVTVVPGSSTSPAPSSSPNPSSSPASTGSTITI--SGSSSIIVSTV 561

Query: 365 PRTWSAGSRGKGTPT 409
             +  +GS G    T
Sbjct: 562 SGSTVSGSTGTSQST 576



 Score = 28.3 bits (60), Expect = 5.5
 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
 Frame = +2

Query: 200 SSPPGTTGFSWAV---VTGSARMLEGRSAPWSASTPGWAHSTAASIRTGGSTIREAGLP- 367
           SSP G+TG +++V   VT  + +  G S    ++    + S+ +   +G ST+     P 
Sbjct: 647 SSPTGSTGSTFSVATEVTSQSTVPSGSSLGTQSTNSSPSPSSLSPSTSGMSTLTSEPSPS 706

Query: 368 RTWSAGSRGK-GTPTHTPAHAQTDARTHKKLRTEVSETGG 484
            T S+G++    TP+  P+ + +   +     T  S + G
Sbjct: 707 STQSSGAQSTLTTPSPNPSQSTSSLESSTSGATTSSGSAG 746


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
           protein K06A9.1b protein.
          Length = 2232

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 22/75 (29%), Positives = 36/75 (48%)
 Frame = +2

Query: 185 APPRVSSPPGTTGFSWAVVTGSARMLEGRSAPWSASTPGWAHSTAASIRTGGSTIREAGL 364
           +P  +S+  G TG +  VV GS+      S+P  +S+P    ST     +G S+I  + +
Sbjct: 504 SPGTMSTVSGPTGSTVTVVPGSSTSPAPSSSPNPSSSPASTGSTITI--SGSSSIIVSTV 561

Query: 365 PRTWSAGSRGKGTPT 409
             +  +GS G    T
Sbjct: 562 SGSTVSGSTGTSQST 576



 Score = 28.3 bits (60), Expect = 5.5
 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
 Frame = +2

Query: 200 SSPPGTTGFSWAV---VTGSARMLEGRSAPWSASTPGWAHSTAASIRTGGSTIREAGLP- 367
           SSP G+TG +++V   VT  + +  G S    ++    + S+ +   +G ST+     P 
Sbjct: 647 SSPTGSTGSTFSVATEVTSQSTVPSGSSLGTQSTNSSPSPSSLSPSTSGMSTLTSEPSPS 706

Query: 368 RTWSAGSRGK-GTPTHTPAHAQTDARTHKKLRTEVSETGG 484
            T S+G++    TP+  P+ + +   +     T  S + G
Sbjct: 707 STQSSGAQSTLTTPSPNPSQSTSSLESSTSGATTSSGSAG 746


>AF022985-10|AAB69961.1|  325|Caenorhabditis elegans Collagen
           protein 142 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 26/88 (29%), Positives = 30/88 (34%), Gaps = 6/88 (6%)
 Frame = +2

Query: 170 APGTDAPPRVSSPPGTTGFSWAVVTGSARMLEGRSAP-WSASTPGWAHSTAASIRTGGST 346
           APG   PP    P G  G   A      R   G   P   A +PG      +    G   
Sbjct: 138 APGPAGPPGAPGPKGNNGQPGAPAQSGGRGPPGPRGPAGDAGSPGQPGHPGSPGNPGRGG 197

Query: 347 IREAGLP----RTWSAG-SRGKGTPTHT 415
            R  GLP    R    G + G G P H+
Sbjct: 198 QRSRGLPGPSGRPGPPGPAGGPGQPGHS 225


>Z71177-3|CAA94869.1|  325|Caenorhabditis elegans Hypothetical
           protein AC3.6 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 23/74 (31%), Positives = 27/74 (36%)
 Frame = +2

Query: 173 PGTDAPPRVSSPPGTTGFSWAVVTGSARMLEGRSAPWSASTPGWAHSTAASIRTGGSTIR 352
           PG    P     PG  G   A     A    GRS   S  +PG A S    +  GG    
Sbjct: 179 PGGRGLPGYPGMPGDNGSGGANGHDGATGQPGRSGTRSYGSPGPAGS-PGRVGRGGPPGP 237

Query: 353 EAGLPRTWSAGSRG 394
           + G P +   GS G
Sbjct: 238 DGGYPMSGEPGSSG 251


>AF077544-1|AAK39241.2|  231|Caenorhabditis elegans Hypothetical
           protein H22K11.3 protein.
          Length = 231

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 169 GSRYGRSPARLITPRNDRFFMG 234
           G+ YG S  R I PR +RFF G
Sbjct: 204 GNGYGNSFGRPILPRGERFFRG 225


>AC024811-5|AAF60775.1|  285|Caenorhabditis elegans Collagen protein
           48 protein.
          Length = 285

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +2

Query: 173 PGTDAPPRVSSPPGTTG 223
           PG DAPP  S PPG  G
Sbjct: 204 PGGDAPPGPSGPPGRPG 220


>Z81094-7|CAB03153.2|  960|Caenorhabditis elegans Hypothetical
           protein F58G11.2 protein.
          Length = 960

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 22/72 (30%), Positives = 34/72 (47%)
 Frame = +1

Query: 169 GSRYGRSPARLITPRNDRFFMGSRYGKRSDAGREVRALVCEYTGVGPLYRCVNQNRRLYD 348
           G+ YGR        R++    GSRYG+R D G   R+    Y+     Y   N+  + Y 
Sbjct: 67  GNSYGRREDDRSHSRDNHG--GSRYGERDDRGNNGRSADNRYSQSNYNYDS-NRGGQHYQ 123

Query: 349 KRSRSSEDVERG 384
           + +  S+D +RG
Sbjct: 124 RDNHGSKD-DRG 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,603,669
Number of Sequences: 27780
Number of extensions: 296655
Number of successful extensions: 1139
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)