Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1g14r
         (833 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y17118-1|CAA76639.1|  355|Homo sapiens SNF5/INI1 protein protein.      32   2.2  
U04847-1|AAA81905.1|  385|Homo sapiens Ini1 protein.                   32   2.2  
DQ230988-1|ABB02184.1|  385|Homo sapiens SWI/SNF related, matrix...    30   9.0  
CR456581-1|CAG30467.1|  385|Homo sapiens SMARCB1 protein.              30   9.0  
BC117114-1|AAI17115.1|  376|Homo sapiens SWI/SNF related, matrix...    30   9.0  
AJ011738-1|CAA09759.1|  376|Homo sapiens Ini1b protein.                30   9.0  
AJ011737-1|CAA09758.1|  385|Homo sapiens integrase interactor 1a...    30   9.0  
AB017523-1|BAC77068.1|  376|Homo sapiens Ini1 protein.                 30   9.0  

>Y17118-1|CAA76639.1|  355|Homo sapiens SNF5/INI1 protein protein.
          Length = 355

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -2

Query: 685 KISSYWKSQHSHQCYHNDALPTSSLYNFRRMGRERSSRT*SSC 557
           K +S W    S+  +H DA+P S+  N  RMGR++  RT   C
Sbjct: 96  KRNSQWVPTLSNSSHHLDAVPCSTTINRNRMGRDK-KRTFPLC 137


>U04847-1|AAA81905.1|  385|Homo sapiens Ini1 protein.
          Length = 385

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -2

Query: 685 KISSYWKSQHSHQCYHNDALPTSSLYNFRRMGRERSSRT*SSC 557
           K +S W    S+  +H DA+P S+  N  RMGR++  RT   C
Sbjct: 126 KRNSQWVPTLSNSSHHLDAVPCSTTINRNRMGRDK-KRTFPLC 167


>DQ230988-1|ABB02184.1|  385|Homo sapiens SWI/SNF related, matrix
           associated, actin dependent regulator of chromatin, sub
           protein.
          Length = 385

 Score = 30.3 bits (65), Expect = 9.0
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -2

Query: 685 KISSYWKSQHSHQCYHNDALPTSSLYNFRRMGRERSSRT*SSC 557
           K +S W     +  +H DA+P S+  N  RMGR++  RT   C
Sbjct: 126 KRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDK-KRTFPLC 167


>CR456581-1|CAG30467.1|  385|Homo sapiens SMARCB1 protein.
          Length = 385

 Score = 30.3 bits (65), Expect = 9.0
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -2

Query: 685 KISSYWKSQHSHQCYHNDALPTSSLYNFRRMGRERSSRT*SSC 557
           K +S W     +  +H DA+P S+  N  RMGR++  RT   C
Sbjct: 126 KRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDK-KRTFPLC 167


>BC117114-1|AAI17115.1|  376|Homo sapiens SWI/SNF related, matrix
           associated, actin dependent regulator of chromatin, sub
           protein.
          Length = 376

 Score = 30.3 bits (65), Expect = 9.0
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -2

Query: 685 KISSYWKSQHSHQCYHNDALPTSSLYNFRRMGRERSSRT*SSC 557
           K +S W     +  +H DA+P S+  N  RMGR++  RT   C
Sbjct: 117 KRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDK-KRTFPLC 158


>AJ011738-1|CAA09759.1|  376|Homo sapiens Ini1b protein.
          Length = 376

 Score = 30.3 bits (65), Expect = 9.0
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -2

Query: 685 KISSYWKSQHSHQCYHNDALPTSSLYNFRRMGRERSSRT*SSC 557
           K +S W     +  +H DA+P S+  N  RMGR++  RT   C
Sbjct: 117 KRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDK-KRTFPLC 158


>AJ011737-1|CAA09758.1|  385|Homo sapiens integrase interactor 1a
           protein (INI1A) protein.
          Length = 385

 Score = 30.3 bits (65), Expect = 9.0
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -2

Query: 685 KISSYWKSQHSHQCYHNDALPTSSLYNFRRMGRERSSRT*SSC 557
           K +S W     +  +H DA+P S+  N  RMGR++  RT   C
Sbjct: 126 KRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDK-KRTFPLC 167


>AB017523-1|BAC77068.1|  376|Homo sapiens Ini1 protein.
          Length = 376

 Score = 30.3 bits (65), Expect = 9.0
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -2

Query: 685 KISSYWKSQHSHQCYHNDALPTSSLYNFRRMGRERSSRT*SSC 557
           K +S W     +  +H DA+P S+  N  RMGR++  RT   C
Sbjct: 117 KRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDK-KRTFPLC 158


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,869,162
Number of Sequences: 237096
Number of extensions: 2347980
Number of successful extensions: 5501
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5500
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10482413384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)