Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1g08f
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||...    40   3e-04
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    28   1.5  
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    26   4.5  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    26   4.5  
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    26   5.9  
SPBC16H5.07c |ppa2||serine/threonine protein phosphatase Ppa2|Sc...    25   7.8  
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    25   7.8  

>SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 462

 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 7/155 (4%)
 Frame = +3

Query: 141 TPVEITLAMSTDPAALEQAAAPYGFGQLTEFGKKTSYKVGEYIKSRYGALL----SDRYN 308
           +PV+ +LA  T   +          G+LT+FG+ T+  +GEY++ RY   L     +  N
Sbjct: 84  SPVDTSLAAPTSDNSPSGVCI---HGELTDFGRVTTRTLGEYLRERYVKQLKFLPDELNN 140

Query: 309 ASEIFIRSTDSTRTKMTVLTAMAAVYPPPEDNWSSEIHWXXXXXXXXXXKYDHNLA--NL 482
            +++++R+T   R   ++    + +YP  +      + +            D NL     
Sbjct: 141 YADVYMRATPMVRALESLEHVFSGLYPESKRKMGLPVIFTRNWS-------DENLLPNEN 193

Query: 483 NCPEFISFYYDQFMKPSEKMAPYRDFLA-RWSEIL 584
           NCP  +   Y++F + + K+  Y   LA R SE++
Sbjct: 194 NCPRLVQL-YEEFAERAAKL--YDPLLAGRASEMM 225


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
 Frame = +3

Query: 153 ITLAMSTDPAALEQAAAPYGFGQLT-EFGKKTSYKVGEYIKSR--YGALLSDRYNASEIF 323
           ITL      A  E       F  L  E  KKT+Y VG Y + R     +L +     E  
Sbjct: 341 ITLQSRYSQALSELETTKRAFAALRKEKSKKTNYSVGAYNEDRNVLSNMLDNERREKEAL 400

Query: 324 IRSTDSTRTKMTVLTAMAA 380
           ++  +S R +++    M A
Sbjct: 401 LQELESLRVQLSKKVPMPA 419


>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 146 GGDHPGHVHGPRRAGAGRG 202
           GG H G +HGP     GRG
Sbjct: 112 GGGHHGPLHGPHGGFGGRG 130


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +3

Query: 510 YDQFMKPSEKMAPYRDFLARWSEILGFDLVQMPALAYMFYDVYTAQLGLGVPLDEATAQK 689
           Y+ + +PS ++  Y + L +W E+    + +   L  M        LG G+ L+  T  K
Sbjct: 409 YNPYTEPSLEVFSYHEKLGKWVEVGNSGMFRPEMLEPMGLPKDVRCLGFGLSLERPTMIK 468


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -2

Query: 124 CTKKVETSSVPSVASPALTCWA-NAAKTPTKYTTRMSAELVL 2
           C K+        + SP+LTC+A +  +T  +YT+  S+ ++L
Sbjct: 238 CEKRPYKYITTDLLSPSLTCFASDILQTVPEYTSSQSSPVLL 279


>SPBC16H5.07c |ppa2||serine/threonine protein phosphatase
           Ppa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 590 ETENFRPSRQEVAVGGHLLGRFHELV 513
           +  N +P R  V V G + G+FH+L+
Sbjct: 54  QENNVQPVRNPVTVCGDIHGQFHDLM 79


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 138 RTPVEITLAMSTDPAALEQAAAPYGFGQLTEFGK 239
           R P+E+TL  S D A      +    G++T+F K
Sbjct: 298 RRPIELTLVHSADTAIPYGEFSGVQLGKITDFSK 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,808,802
Number of Sequences: 5004
Number of extensions: 57443
Number of successful extensions: 190
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)