Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1g08f
(689 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0013 - 99952-100413,100534-100704 32 0.49
04_01_0453 + 5869627-5870232,5870383-5870897,5870964-5871600 31 0.65
02_01_0121 + 890391-890429,890565-890730,891209-891769,892365-89... 31 1.1
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 30 1.5
08_01_0213 - 1703682-1703696,1703824-1703919,1704033-1704104,170... 30 2.0
03_03_0115 + 14568904-14569152,14569561-14569797,14569913-145701... 29 2.6
11_04_0250 + 15335457-15335882 29 4.6
02_05_0968 + 33156585-33156941,33158510-33159902,33160035-331601... 29 4.6
05_03_0122 - 8669422-8669609,8669759-8670111,8670669-8670824,867... 28 6.1
02_05_1167 - 34638709-34639104,34640653-34642158 28 6.1
01_06_1493 + 37753816-37755558 28 6.1
08_02_1599 - 28132748-28132776,28132855-28133113 28 8.0
08_02_0310 + 15630589-15631035,15631989-15632134,15632732-156329... 28 8.0
06_01_0892 - 6827510-6827590,6829348-6830412 28 8.0
04_04_0176 - 23329589-23331043 28 8.0
03_06_0090 + 31570588-31570710,31570962-31571080,31572215-315722... 28 8.0
02_05_0808 - 31883413-31883813,31883903-31884377 28 8.0
>07_01_0013 - 99952-100413,100534-100704
Length = 210
Score = 31.9 bits (69), Expect = 0.49
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +1
Query: 532 PRRWPPTATSWRDGLKFSVSTSCRCPPWRTCSTTY 636
PRRWPPTA D + ++ S PP R CS T+
Sbjct: 96 PRRWPPTAA---DATRAGLAQS-SVPPCRPCSATH 126
>04_01_0453 + 5869627-5870232,5870383-5870897,5870964-5871600
Length = 585
Score = 31.5 bits (68), Expect = 0.65
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +2
Query: 89 RRNRTGFNFFGTSARRQDAGGDHPGHVHGPRRAGA--GRG 202
R +R GF G R A G HPG V G + GA GRG
Sbjct: 3 RNHRQGFGAGGNGGNRGFARGFHPGFVVGNQHGGAPGGRG 42
>02_01_0121 +
890391-890429,890565-890730,891209-891769,892365-892845,
892952-893033,893818-894021
Length = 510
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 380 SGHRGQDSHLRACRVRGPDED 318
SGHR +D+H RVR P+ED
Sbjct: 97 SGHRSRDTHSMGSRVRVPEED 117
>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 30.3 bits (65), Expect = 1.5
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +1
Query: 49 WLRWPSTSGLATLQTEPNWFQLFWYI 126
W+ W + + +T P W +LFW I
Sbjct: 3565 WIPWDNNANSSTAGPSPEWIRLFWKI 3590
>08_01_0213 -
1703682-1703696,1703824-1703919,1704033-1704104,
1704372-1704444,1704508-1704710,1705058-1706330,
1706800-1706868,1706940-1707088,1707275-1707487,
1708385-1708669
Length = 815
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +1
Query: 136 TGRRWRSPWPCPR-TPPRWSRPRLPMALDNSLSSVRRPATKWESTSSHVT 282
+G R PW PR PRWS P P D S + SSHVT
Sbjct: 3 SGGRRLPPWTSPRGAAPRWS-PCTPAGADGSGRAAHATPPASGGCSSHVT 51
>03_03_0115 +
14568904-14569152,14569561-14569797,14569913-14570130,
14570586-14570749,14571510-14571733
Length = 363
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = +1
Query: 46 SWL-RWPSTSGLATLQTEPNWFQLF 117
+WL RWP L L E NWFQ F
Sbjct: 163 AWLKRWPQQIALIKLAGEGNWFQQF 187
>11_04_0250 + 15335457-15335882
Length = 141
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = +2
Query: 98 RTGFNFFGTSARRQDAGGDHPGHVHGPRRAGAGRGSLWLWTT 223
R G S RRQ GG G G RRAG G++W+ T
Sbjct: 17 RRGCAVLRISDRRQSRGGPTAGG--GVRRAGGWGGAIWMGRT 56
>02_05_0968 +
33156585-33156941,33158510-33159902,33160035-33160118,
33160216-33160265
Length = 627
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +3
Query: 156 TLAMSTDPAALEQAAAPYGFGQLTEFGKK 242
T MST PA + AA GF FGKK
Sbjct: 494 TTTMSTPPARVSGAARSRGFKSFLSFGKK 522
>05_03_0122 -
8669422-8669609,8669759-8670111,8670669-8670824,
8670999-8671168,8672133-8672297,8673190-8673384,
8673506-8673634,8673759-8673980
Length = 525
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 23 ASRVLCRRLGCVGPARQGWRRYRRNRTGFNFFGTSARRQDAGGD 154
A+ V+ R A + ++ +R N T FNF +S R AG D
Sbjct: 98 AAAVVANRTQAAPSASETFKLWRINETTFNFRASSGRFVGAGSD 141
>02_05_1167 - 34638709-34639104,34640653-34642158
Length = 633
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +2
Query: 74 GWRRYRRNRTGFNFFGTSARRQDAGGD--HPG 163
G+R R ++T F F G AR +DAGG HPG
Sbjct: 194 GFRIQRSDQT-FLFLGDGARPEDAGGKELHPG 224
>01_06_1493 + 37753816-37755558
Length = 580
Score = 28.3 bits (60), Expect = 6.1
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = -1
Query: 509 VERDELRTVEVCQVMVIFRWDGGVGHGGPVNL*APVVFRRWVDSGHRGQDSHLRACRV 336
VER E T ++ ++ R GGVG G L + VV R G+ RACRV
Sbjct: 469 VERREDGTADILPLLAASRLVGGVGDGRREELVSAVVDGRLGGDADMGEAE--RACRV 524
>08_02_1599 - 28132748-28132776,28132855-28133113
Length = 95
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +1
Query: 541 WPPTATSWRDGLKFSVSTSCRCPP 612
WPPTA DG++ + C C P
Sbjct: 2 WPPTAALVHDGIEIHLFFCCLCLP 25
>08_02_0310 +
15630589-15631035,15631989-15632134,15632732-15632900,
15633040-15633138,15633817-15633899,15634028-15634157
Length = 357
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +1
Query: 106 FQLFWYIGTATGRRWRS-PWPCPRTPPRWSRPRLPMALDNSLSSV 237
F FW T RRW++ W P + P L + L SLSS+
Sbjct: 301 FSPFWVYNDLTARRWKNGSWLLPLALIPFVGPSLYLLLRPSLSSL 345
>06_01_0892 - 6827510-6827590,6829348-6830412
Length = 381
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 177 PAALEQAAAPYGFGQLTEFGKKTSYKVGEYIKSRYG 284
P + E+ YG+G +G+K +Y+ G Y K YG
Sbjct: 310 PYSQEETQGSYGYG----YGEKPAYESGGYNKPSYG 341
>04_04_0176 - 23329589-23331043
Length = 484
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/20 (70%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +2
Query: 146 GGDHPGHVHGPRRA-GAGRG 202
GGD P HVH PR A G GRG
Sbjct: 213 GGDDP-HVHAPRAARGRGRG 231
>03_06_0090 +
31570588-31570710,31570962-31571080,31572215-31572284,
31572544-31573492,31574789-31575699
Length = 723
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 172 RTPPRWSRPRLPMALDNSLSSVRRPATKWESTSSH 276
R+P R RPRL L+N +RR + S +SH
Sbjct: 599 RSPERRQRPRLSAGLENRGLLLRREVGQCASAASH 633
>02_05_0808 - 31883413-31883813,31883903-31884377
Length = 291
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 577 KFSVSTSCRCPPWRTCSTTYTLLSSGWASRW 669
+FSV+ W+T ST + + W++RW
Sbjct: 123 EFSVTLELHARLWKTPSTLVAVAALAWSARW 153
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,182,552
Number of Sequences: 37544
Number of extensions: 503366
Number of successful extensions: 1947
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1947
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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