Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1g06r
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3...    29   0.88 
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    28   1.5  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   1.5  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    26   6.2  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    25   8.2  
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo...    25   8.2  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    25   8.2  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    25   8.2  

>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 449

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
 Frame = -1

Query: 208 AITIGDVKSNLQINLFGREVGPAVNNFL-EKIPVYLTDYAAEVSRVLEYVAQSRHQQITV 32
           AITIGD  + L  +   +++GP V +F  + +P +LT ++  +S   +++ Q   Q +++
Sbjct: 178 AITIGDNSTLLYTSWLFQKIGPPVLSFSDDDVPGFLTHFS--LSNYQQHLYQVLTQNVSL 235

Query: 31  NY 26
            +
Sbjct: 236 RF 237


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = -1

Query: 286 ALENVVAEATASVSLADNIIVSDIGAAITIGDVKSNLQINLFGREVGPAVNNFLEKIPVY 107
           A E  +A    S  L  N+    + AAIT    K  +  + F +E G  V    E+I   
Sbjct: 74  AHEAFIASKIVSGDLKTNL---QVNAAITYCKDKDTIDESEFDKETGVGVVLTPEQIEQL 130

Query: 106 LTDYAAE-VSRVLE 68
           + DY AE  S++LE
Sbjct: 131 VGDYVAENKSKILE 144


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 179 PPNQSLRTRSWTSRQQLPREDPCLPDGLRSRGQPCSGVRRPISS 48
           PP  S+   S  S   +P + P +P  L    QP + V+ P S+
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSA 187


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 212 SDVTDNDVVCEGDGSGSLSNDVLKGK-SSGSERPXDAAENADF 337
           SDV D +V+ E   +  +SN V + K  S  E   D A++  F
Sbjct: 404 SDVEDTEVIIEDQDNQEISNHVAEEKIDSDEEETIDDAKSEMF 446


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 121  KIPVYLTDYAAEVSRVLEYVAQSRHQQITVNYSND 17
            K+P +  DY  EV R+++  A    + I   +S +
Sbjct: 968  KVPTFYADYVNEVKRIIQRNANLEFEAIWKGHSEN 1002


>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
           Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = -1

Query: 349 SXEGEIRIFSRVXRSFASGGLALENVVAEA--TASVSLADNIIVSDI-GAAITIGDVK 185
           S +GEI   + V  +  + G  L NVV EA   A     D +I SD+  AA  + D+K
Sbjct: 320 SKQGEIDYEALVKLTDGTNGADLRNVVTEAGFIAIKEDRDYVIQSDLMSAARKVADLK 377


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +2

Query: 245 GDGSGSLSNDVLKGKSSGSERP-XDAAENADFSFXG 349
           G GSG L ND L+ K S    P     +NA  S  G
Sbjct: 117 GPGSGKLLNDTLQSKISSIHMPHVQQGDNAVVSSVG 152


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = +2

Query: 197 NSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPXDAAENADFS 340
           +SYC  +  D+ ++ E   S +L++D+L  +  G+E     +  + +S
Sbjct: 261 SSYCDVNGMDS-IIFEPTESSALTDDILFAEDPGTESIISTSRKSSYS 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,341,533
Number of Sequences: 5004
Number of extensions: 39637
Number of successful extensions: 127
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)