Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1f22r
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    28   1.5  
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    28   1.9  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    27   3.4  
SPBC577.03c |||GCN5-related N-acetyltransferase |Schizosaccharom...    26   5.9  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    26   5.9  
SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   5.9  

>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 233 SVPLTNNTTALLQINKGCTQSSPCSC 156
           S+P+T+N   +L ++KG T   P  C
Sbjct: 338 SIPITSNPPPMLNLSKGSTSVEPTFC 363


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 783 LF*KTKYIYIF*YLCPYFPFQIL 851
           +F K  Y+++F Y CP+ PFQIL
Sbjct: 497 IFKKICYLWLFLY-CPFTPFQIL 518


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -1

Query: 751 LFLDVVTDAQTSFNSFIKSSLRFGFMILFSNCL 653
           LF+D+ +D Q + +  I SSL+    ++F  C+
Sbjct: 215 LFIDITSDYQLNLDKVIHSSLKKLSFLIFKVCI 247


>SPBC577.03c |||GCN5-related N-acetyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 403 DFDPRPQDVHSTRFTQNSSIHI 338
           +FD  P D ++T  T+ S +HI
Sbjct: 111 EFDDSPSDANATNATKESEVHI 132


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
 Frame = +2

Query: 320 NKNLLVNMDR*ILGKPG*VYVLRP-GVEISIVFYKYSKIAQLRCDSI--YDSVWRLSSGE 490
           N+ + + MD+  LG+    Y     G  + +V      +A +   ++  +DS W L  G 
Sbjct: 367 NEEITIKMDKINLGERSIDYYADLIGSGVGVVVSTCVFVAWIAIGNVMHWDSNWWLIIGT 426

Query: 491 PQGLPKYVHS*KNLMIYFRLASTHPTQLNTRRDHTKA 601
             GL  ++       +YFR +S   T++ T  D   A
Sbjct: 427 YTGLVGFLDGFVLRNVYFRESSKEATEIQTLIDEDYA 463


>SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 242 SSSSVPLTNNTTALLQINKGCTQSSPCS 159
           S+SSVP  +NT  +   N  C  S P S
Sbjct: 26  SNSSVPTPDNTLVVSYTNTSCYTSGPLS 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,372,535
Number of Sequences: 5004
Number of extensions: 69613
Number of successful extensions: 149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)