Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1f22r
         (853 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1153 + 30787574-30787608,30787982-30788089,30788651-307886...    28   8.2  
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332...    28   8.2  

>03_05_1153 +
           30787574-30787608,30787982-30788089,30788651-30788689,
           30789181-30789184,30789496-30789580,30789609-30790321
          Length = 327

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -2

Query: 828 DIDIKICIYTLFSRIINYIFINVLRYCFWMLL 733
           D++ + C Y    R++  I ++ +++CFW LL
Sbjct: 72  DLECERC-YAKIDRVLTRIRVSRIKWCFWQLL 102


>01_01_0446 +
           3321832-3322232,3322398-3322455,3322810-3323748,
           3324504-3324654,3324740-3324818,3325826-3325934
          Length = 578

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -3

Query: 752 IVFGCCYRCTNQFQFFHKVEFKIRFH 675
           I+ G C +C  +F F   +  +++FH
Sbjct: 135 ILHGACVKCPTKFLFHRSINIRLQFH 160


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,820,316
Number of Sequences: 37544
Number of extensions: 345802
Number of successful extensions: 554
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)