Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1f22f
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0314 - 2395113-2395760,2396151-2396738,2397218-2397252,239...    31   1.1  
10_08_0772 + 20471748-20473004                                         29   2.6  
04_04_1584 + 34601927-34602144,34603324-34603510,34604239-346044...    29   2.6  
01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705     29   2.6  
03_02_0289 - 7115045-7115867,7116373-7116929,7117327-7117544,711...    29   3.4  
08_02_0789 + 21211110-21211296,21211636-21211937,21212034-21212702     29   4.5  
01_06_1061 - 34169469-34169624,34170837-34170938,34171029-341711...    29   4.5  
02_05_0488 + 29448430-29448526,29448649-29448756,29448855-294490...    28   5.9  
10_04_0005 + 7390697-7390705,7390943-7391096,7391225-7391424,739...    28   7.8  
07_01_1101 + 10122804-10123758,10123872-10123910,10124072-101242...    28   7.8  

>12_01_0314 -
           2395113-2395760,2396151-2396738,2397218-2397252,
           2397546-2397632,2397913-2397985,2398648-2398714,
           2398795-2398931,2400196-2400217,2400733-2400807,
           2402281-2402365,2402605-2403334
          Length = 848

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 151 WALGRTFRGQGVLR-VPFLFPVHSDLMKNNRFGYFLRHTVSHVRF 20
           W  GR+ +G+GV+R   +L P    LMKN+    FL  T  H  F
Sbjct: 392 WDCGRSPKGRGVVRCTNYLLPGQQKLMKNSN---FLEGTEGHQTF 433


>10_08_0772 + 20471748-20473004
          Length = 418

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/67 (26%), Positives = 34/67 (50%)
 Frame = +2

Query: 74  HEIRVDGKKKRHSEYALPPKGASQGPRKVSGSEFVYVNSAYVGSTQSVNQRLPEPPTSVI 253
           + I++DG K   +  ALPP G +   + ++   F+ V+SAY    + V + +   PT+  
Sbjct: 257 YPIQLDGIKAGDAAIALPPSGNTVLVQTLAPMSFL-VDSAYQALKKEVTKAVGAAPTATP 315

Query: 254 REQYWTC 274
            + +  C
Sbjct: 316 LQPFDLC 322


>04_04_1584 +
           34601927-34602144,34603324-34603510,34604239-34604496,
           34604866-34604965,34608523-34608639,34608704-34608804,
           34609035-34610141
          Length = 695

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = +2

Query: 113 EYALPPKGASQGPRKVSGSEFVYVNSAYVGSTQSVNQRLPEPP 241
           E  + PK  S GPR      FVY   +      S  Q LP PP
Sbjct: 455 ESVVKPKSTSSGPRSDQFEAFVYRTPSPRRHLSSTCQSLPPPP 497


>01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705
          Length = 1172

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 280 VATDAKSDPRRSRGGPARSHHR-LDRHNDFKRQRRQCHRR 396
           +AT   S P + R  P+ SHHR L R +     RR  HRR
Sbjct: 1   MATSLSSAPTQLRPSPSPSHHRLLHRSSLLPFPRRHHHRR 40


>03_02_0289 -
           7115045-7115867,7116373-7116929,7117327-7117544,
           7117829-7117928,7118665-7118832
          Length = 621

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 24/85 (28%), Positives = 43/85 (50%)
 Frame = -2

Query: 552 VTTHKHL*MLTKANRSYSCYILILNIIYTNTSSSLEKI*ELKL*SGVECRNIPPMTLSSL 373
           +T  + L +L +    ++  I+   +   N+S  +E+   + L + +E   IPP TLSSL
Sbjct: 373 ITQVEELKILMRMFPIWATGIVFFTVCAQNSSMFIEQ--GMALNNQIESFKIPPATLSSL 430

Query: 372 SLKVIVTIKPMMAPSRTPPAAARIT 298
            +  IV   P+   +   P A+R+T
Sbjct: 431 DVISIVVWVPIY-ETFVVPIASRLT 454


>08_02_0789 + 21211110-21211296,21211636-21211937,21212034-21212702
          Length = 385

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/69 (28%), Positives = 30/69 (43%)
 Frame = -1

Query: 334 SEQDPPCCGEDHSLRLWPPRTCPILFTDDTCWWFWEPLVNALSAPDISRIHINKFTP*NF 155
           S +   C G   SL  +  R    + TD   W   E  +  L+ P + +  I+K  P N 
Sbjct: 108 STEGTKCIGLKKSLVFYKGRAARGIKTD---WMMHEFRLPTLTDPSLPKKPIDKNIPLND 164

Query: 154 SWALGRTFR 128
           SW + R F+
Sbjct: 165 SWTICRIFK 173


>01_06_1061 -
           34169469-34169624,34170837-34170938,34171029-34171180,
           34172087-34172153,34172239-34172419,34172655-34172778,
           34174775-34174871,34175929-34176331,34176729-34176888,
           34177412-34177486,34177714-34177892,34178224-34178303,
           34178561-34179322
          Length = 845

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 85  SGREKEKALGVRLAPERCVPRPTKSFRE 168
           S +E+E+  GVR+ P +  P P  + RE
Sbjct: 63  SNKERERERGVRIMPSKAKPEPALAARE 90


>02_05_0488 +
           29448430-29448526,29448649-29448756,29448855-29449000,
           29449109-29449319,29449752-29449989,29450098-29450248,
           29450353-29450682
          Length = 426

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +2

Query: 113 EYALPPKGASQGPRKVSGSEFVYVNSAYVGSTQSVN 220
           E A PP  A++  +KVS SEF          TQSVN
Sbjct: 381 EPAQPPLFAAREMKKVSASEFSLAMKTETTKTQSVN 416


>10_04_0005 +
           7390697-7390705,7390943-7391096,7391225-7391424,
           7391649-7391739,7392042-7392385
          Length = 265

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = +2

Query: 35  DSMSKKISEP-IILHEIRV-DGKKKRHSEYALPPKGASQGPRKVSGSEFVYVNSAYVGST 208
           +S+ +K   P +I+ E++  + +KK   E   P +  + G  ++   +F      YV   
Sbjct: 178 ESIQRKTRRPAVIVEEVKPREEEKKAEEEEKKPDEDKADGIEEIKKYDFWPPVQYYVEYV 237

Query: 209 QSVNQRLPEPPTSVIREQY 265
                 LP PPT+++ E++
Sbjct: 238 YPYP--LPPPPTALVSEEF 254


>07_01_1101 +
           10122804-10123758,10123872-10123910,10124072-10124251,
           10124841-10124951,10125448-10125560
          Length = 465

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +1

Query: 4   HQKSTGNGHVRQYVEEN--IRTDYSS*DQSGREKEKALGVRLAPERCVPRPTK 156
           ++K+      R   ++N  ++T+  S  +S  E E+A  +  A  R +PRP K
Sbjct: 411 NEKAKAKAKARAVYQQNKGVKTEDQSETESDNEDEQAKVMAKAKARVIPRPNK 463


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,496,244
Number of Sequences: 37544
Number of extensions: 401669
Number of successful extensions: 1065
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)