Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1f22f
(676 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81460-5|CAB03832.1| 952|Caenorhabditis elegans Hypothetical pr... 31 0.99
Z70209-3|CAA94147.1| 952|Caenorhabditis elegans Hypothetical pr... 31 0.99
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 30 1.7
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 30 1.7
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 30 1.7
AF039049-2|AAB94252.2| 297|Caenorhabditis elegans Serpentine re... 29 3.0
Z30423-3|CAA83005.2| 456|Caenorhabditis elegans Hypothetical pr... 28 7.0
AC084197-15|AAN63425.1| 391|Caenorhabditis elegans Hypothetical... 28 7.0
AC084197-14|AAM44396.1| 526|Caenorhabditis elegans Hypothetical... 28 7.0
AC084197-13|AAM44395.1| 571|Caenorhabditis elegans Hypothetical... 28 7.0
U28943-6|AAA68360.1| 324|Caenorhabditis elegans Hypothetical pr... 27 9.2
>Z81460-5|CAB03832.1| 952|Caenorhabditis elegans Hypothetical
protein C04A11.4 protein.
Length = 952
Score = 30.7 bits (66), Expect = 0.99
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -2
Query: 393 PMTLSSLSLKVIVTIKPMMAPSRTPPAAARITL 295
P T SS SL+ +I+P AP PPA A+ TL
Sbjct: 887 PKTASSTSLRRNESIRPEQAPPPPPPAHAKPTL 919
>Z70209-3|CAA94147.1| 952|Caenorhabditis elegans Hypothetical
protein C04A11.4 protein.
Length = 952
Score = 30.7 bits (66), Expect = 0.99
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -2
Query: 393 PMTLSSLSLKVIVTIKPMMAPSRTPPAAARITL 295
P T SS SL+ +I+P AP PPA A+ TL
Sbjct: 887 PKTASSTSLRRNESIRPEQAPPPPPPAHAKPTL 919
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 143 QGPRKVSGSEFVYVNSAYVGSTQSVNQRLPEP 238
+GPRKV +FV ++AY Q++N P P
Sbjct: 1591 EGPRKVDIKDFVSTDTAYAVVVQAINDDGPGP 1622
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 143 QGPRKVSGSEFVYVNSAYVGSTQSVNQRLPEP 238
+GPRKV +FV ++AY Q++N P P
Sbjct: 1654 EGPRKVDIKDFVSTDTAYAVVVQAINDDGPGP 1685
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 143 QGPRKVSGSEFVYVNSAYVGSTQSVNQRLPEP 238
+GPRKV +FV ++AY Q++N P P
Sbjct: 1654 EGPRKVDIKDFVSTDTAYAVVVQAINDDGPGP 1685
>AF039049-2|AAB94252.2| 297|Caenorhabditis elegans Serpentine
receptor, class x protein67 protein.
Length = 297
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 623 VITICLSIIGTYLVNCQVLHIAHKLPPI 540
+ I ++ IG L NC +L+ HKLPP+
Sbjct: 9 IALIPITFIGAVL-NCSILYAIHKLPPL 35
>Z30423-3|CAA83005.2| 456|Caenorhabditis elegans Hypothetical
protein T20G5.4 protein.
Length = 456
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -1
Query: 199 DISRIHINK-FTP*NFSWALGRTFRGQGVLRVPFLFPVHSDLMKNNRFG 56
D+ + + NK F P N++WAL R +G++ + V S+ +K R G
Sbjct: 172 DLIQYNYNKYFLPFNWAWALVYNARKEGLIEGDYYVTVISEDIKKFRTG 220
>AC084197-15|AAN63425.1| 391|Caenorhabditis elegans Hypothetical
protein Y73B6BL.5c protein.
Length = 391
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/39 (48%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Frame = +1
Query: 292 AKSDPRRS---RGGPARSHHRLDRHNDFKRQRR--QCHR 393
A S PRRS RG + HH RH D QRR Q HR
Sbjct: 304 APSPPRRSFGDRGNRSDEHHGGSRHMDVGPQRRRLQDHR 342
>AC084197-14|AAM44396.1| 526|Caenorhabditis elegans Hypothetical
protein Y73B6BL.5b protein.
Length = 526
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/39 (48%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Frame = +1
Query: 292 AKSDPRRS---RGGPARSHHRLDRHNDFKRQRR--QCHR 393
A S PRRS RG + HH RH D QRR Q HR
Sbjct: 439 APSPPRRSFGDRGNRSDEHHGGSRHMDVGPQRRRLQDHR 477
>AC084197-13|AAM44395.1| 571|Caenorhabditis elegans Hypothetical
protein Y73B6BL.5a protein.
Length = 571
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/39 (48%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Frame = +1
Query: 292 AKSDPRRS---RGGPARSHHRLDRHNDFKRQRR--QCHR 393
A S PRRS RG + HH RH D QRR Q HR
Sbjct: 484 APSPPRRSFGDRGNRSDEHHGGSRHMDVGPQRRRLQDHR 522
>U28943-6|AAA68360.1| 324|Caenorhabditis elegans Hypothetical
protein E04F6.2 protein.
Length = 324
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 405 RNIPPMTLSSLSLKVIVTIKPMMAPSRT 322
R +PP + S V PM+APSRT
Sbjct: 93 RKVPPFSYQSYQQNTSVVPLPMIAPSRT 120
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,645,575
Number of Sequences: 27780
Number of extensions: 332261
Number of successful extensions: 931
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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