Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1f22f
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    26   0.29 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.87 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.7  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   4.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.1  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   8.1  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 3/81 (3%)
 Frame = -1

Query: 241 WWFWEPLVNALSAPDISRIHINKFTP*NFSWALGRT---FRGQGVLRVPFLFPVHSDLMK 71
           WWFW    +  SAP   +       P  FS  +  T   F   G  ++  +   + DL  
Sbjct: 29  WWFWTATSHEASAPAEGKFKTVSKVPGPFSLPIFGTRWIFSCIGYYKLNKIHDAYKDL-- 86

Query: 70  NNRFGYFLRHTVSHVRFPWIS 8
           N R+G   +       FP IS
Sbjct: 87  NQRYGALCKEEALW-NFPMIS 106


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +2

Query: 149 PRKVSGSEFVYVNSAYVGSTQSVNQRLPEPP 241
           P  +S S   YVNS Y    Q      P PP
Sbjct: 369 PPTLSESYSSYVNSMYASGAQFATPCTPSPP 399


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 295  LRLWPPRTCPILF 257
            L +WP   CPIL+
Sbjct: 1519 LHVWPDNGCPILY 1531


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 295  LRLWPPRTCPILF 257
            L +WP   CPIL+
Sbjct: 1515 LHVWPDNGCPILY 1527


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 68  ILHEIRVDGKKKRHSEYALPPK 133
           ILHE  VD  +       +PPK
Sbjct: 412 ILHEHNVDDNEDHDENMIIPPK 433


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -2

Query: 345 PMMAPSRTPPAAARITLCVCGHREHVQYCSRMTLV 241
           P  + SR PP   +  +CV    EH +     T V
Sbjct: 473 PAFSHSRCPPEIHKSCICVRFIAEHTKMLEDSTKV 507


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -2

Query: 345 PMMAPSRTPPAAARITLCVCGHREHVQYCSRMTLV 241
           P  + SR PP   +  +CV    EH +     T V
Sbjct: 473 PAFSHSRCPPEIHKSCICVRFIAEHTKMLEDSTKV 507


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 490 DIARVTTISFSEHSQVLMG 546
           D+      SFSEH  V++G
Sbjct: 201 DVLATDERSFSEHDSVMLG 219


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,001
Number of Sequences: 438
Number of extensions: 4019
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)