Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1f21r
(563 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024785-3|AAF60597.2| 456|Caenorhabditis elegans Hypothetical ... 41 5e-04
AL032627-8|CAB63354.2| 373|Caenorhabditis elegans Hypothetical ... 36 0.027
U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical pr... 34 0.061
Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical p... 33 0.11
Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical p... 33 0.11
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 33 0.14
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 33 0.14
Z46343-8|CAA86461.1| 549|Caenorhabditis elegans Hypothetical pr... 33 0.19
Z35598-9|CAA84658.1| 549|Caenorhabditis elegans Hypothetical pr... 33 0.19
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 33 0.19
Z92849-5|CAB07430.1| 163|Caenorhabditis elegans Hypothetical pr... 32 0.33
AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical... 30 1.0
U13642-8|AAG00040.1| 428|Caenorhabditis elegans Similar to tran... 30 1.3
U13642-7|AAZ32791.1| 446|Caenorhabditis elegans Similar to tran... 30 1.3
AF036693-4|AAK29786.1| 360|Caenorhabditis elegans Hypothetical ... 29 1.7
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 29 2.3
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 29 2.3
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 29 2.3
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 29 2.3
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 29 2.3
Z93381-1|CAB07604.1| 509|Caenorhabditis elegans Hypothetical pr... 29 3.1
AF039712-1|AAK21402.2| 239|Caenorhabditis elegans 2 (zwei) ig-d... 29 3.1
Z68105-5|CAA92123.2| 729|Caenorhabditis elegans Hypothetical pr... 28 4.0
AL009066-1|CAA15625.2| 729|Caenorhabditis elegans Hypothetical ... 28 4.0
AC025727-4|AAG23388.3| 463|Caenorhabditis elegans Hypothetical ... 28 4.0
Z68315-6|CAA92671.1| 219|Caenorhabditis elegans Hypothetical pr... 28 5.3
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 27 7.0
U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly glu... 27 7.0
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu... 27 7.0
Z69383-1|CAA93412.1| 409|Caenorhabditis elegans Hypothetical pr... 27 9.3
U93846-1|AAB58268.1| 768|Caenorhabditis elegans elongation fact... 27 9.3
U10414-7|AAN63383.1| 768|Caenorhabditis elegans Elongation fact... 27 9.3
>AC024785-3|AAF60597.2| 456|Caenorhabditis elegans Hypothetical
protein Y46C8AL.2 protein.
Length = 456
Score = 41.1 bits (92), Expect = 5e-04
Identities = 24/68 (35%), Positives = 32/68 (47%)
Frame = +3
Query: 330 RGVPSAPVTVTGAPSTMAGPTEMGS*XSTRAGPTEMGS*VXTRAGPTEMGTXVSTRXGPT 509
+ P+ P T+ P+T PT M S +T PT M S T PT M + +T PT
Sbjct: 169 KSTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPT 228
Query: 510 EMGSXVST 533
M S +T
Sbjct: 229 TMKSTPTT 236
Score = 41.1 bits (92), Expect = 5e-04
Identities = 24/68 (35%), Positives = 32/68 (47%)
Frame = +3
Query: 330 RGVPSAPVTVTGAPSTMAGPTEMGS*XSTRAGPTEMGS*VXTRAGPTEMGTXVSTRXGPT 509
+ P+ P T+ P+T PT M S +T PT M S T PT M + +T PT
Sbjct: 283 KSTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPT 342
Query: 510 EMGSXVST 533
M S +T
Sbjct: 343 TMKSTPTT 350
Score = 40.7 bits (91), Expect = 7e-04
Identities = 25/69 (36%), Positives = 32/69 (46%)
Frame = +3
Query: 327 TRGVPSAPVTVTGAPSTMAGPTEMGS*XSTRAGPTEMGS*VXTRAGPTEMGTXVSTRXGP 506
T P+ P T+ P+T PT M S +T PT M S T PT M + +T P
Sbjct: 181 TPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTP 240
Query: 507 TEMGSXVST 533
T M S +T
Sbjct: 241 TTMKSTPTT 249
Score = 40.7 bits (91), Expect = 7e-04
Identities = 25/69 (36%), Positives = 32/69 (46%)
Frame = +3
Query: 327 TRGVPSAPVTVTGAPSTMAGPTEMGS*XSTRAGPTEMGS*VXTRAGPTEMGTXVSTRXGP 506
T P+ P T+ P+T PT M S +T PT M S T PT M + +T P
Sbjct: 194 TPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTP 253
Query: 507 TEMGSXVST 533
T M S +T
Sbjct: 254 TTMKSTPTT 262
Score = 40.7 bits (91), Expect = 7e-04
Identities = 25/69 (36%), Positives = 32/69 (46%)
Frame = +3
Query: 327 TRGVPSAPVTVTGAPSTMAGPTEMGS*XSTRAGPTEMGS*VXTRAGPTEMGTXVSTRXGP 506
T P+ P T+ P+T PT M S +T PT M S T PT M + +T P
Sbjct: 207 TPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTP 266
Query: 507 TEMGSXVST 533
T M S +T
Sbjct: 267 TTMKSTPTT 275
Score = 40.7 bits (91), Expect = 7e-04
Identities = 25/69 (36%), Positives = 32/69 (46%)
Frame = +3
Query: 327 TRGVPSAPVTVTGAPSTMAGPTEMGS*XSTRAGPTEMGS*VXTRAGPTEMGTXVSTRXGP 506
T P+ P T+ P+T PT M S +T PT M S T PT M + +T P
Sbjct: 220 TPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTP 279
Query: 507 TEMGSXVST 533
T M S +T
Sbjct: 280 TTMKSTPTT 288
Score = 40.7 bits (91), Expect = 7e-04
Identities = 25/69 (36%), Positives = 32/69 (46%)
Frame = +3
Query: 327 TRGVPSAPVTVTGAPSTMAGPTEMGS*XSTRAGPTEMGS*VXTRAGPTEMGTXVSTRXGP 506
T P+ P T+ P+T PT M S +T PT M S T PT M + +T P
Sbjct: 295 TPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTP 354
Query: 507 TEMGSXVST 533
T M S +T
Sbjct: 355 TTMKSTPTT 363
Score = 40.7 bits (91), Expect = 7e-04
Identities = 25/69 (36%), Positives = 32/69 (46%)
Frame = +3
Query: 327 TRGVPSAPVTVTGAPSTMAGPTEMGS*XSTRAGPTEMGS*VXTRAGPTEMGTXVSTRXGP 506
T P+ P T+ P+T PT M S +T PT M S T PT M + +T P
Sbjct: 308 TPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTP 367
Query: 507 TEMGSXVST 533
T M S +T
Sbjct: 368 TTMKSTPTT 376
Score = 40.7 bits (91), Expect = 7e-04
Identities = 25/69 (36%), Positives = 32/69 (46%)
Frame = +3
Query: 327 TRGVPSAPVTVTGAPSTMAGPTEMGS*XSTRAGPTEMGS*VXTRAGPTEMGTXVSTRXGP 506
T P+ P T+ P+T PT M S +T PT M S T PT M + +T P
Sbjct: 321 TPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTP 380
Query: 507 TEMGSXVST 533
T M S +T
Sbjct: 381 TTMKSTPTT 389
Score = 40.7 bits (91), Expect = 7e-04
Identities = 25/69 (36%), Positives = 32/69 (46%)
Frame = +3
Query: 327 TRGVPSAPVTVTGAPSTMAGPTEMGS*XSTRAGPTEMGS*VXTRAGPTEMGTXVSTRXGP 506
T P+ P T+ P+T PT M S +T PT M S T PT M + +T P
Sbjct: 334 TPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTP 393
Query: 507 TEMGSXVST 533
T M S +T
Sbjct: 394 TTMKSTPTT 402
Score = 27.9 bits (59), Expect = 5.3
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = +3
Query: 330 RGVPSAPVTVTGAPSTMAGPTEMGS*XSTRAGPTEMGS*VXTRAGPTEMGTXVSTRXGPT 509
+ P+ P T+ P+T PT M ST PT M ++ PT T S+ PT
Sbjct: 397 KSTPTTPTTMKSTPTTPTTPTTM---KSTPTTPTTM------KSTPTTPSTMKSSPTTPT 447
Query: 510 EM 515
M
Sbjct: 448 TM 449
>AL032627-8|CAB63354.2| 373|Caenorhabditis elegans Hypothetical
protein Y41C4A.5 protein.
Length = 373
Score = 35.5 bits (78), Expect = 0.027
Identities = 26/90 (28%), Positives = 43/90 (47%)
Frame = +2
Query: 92 GLGKSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLFGNVLN 271
G G +SG+ + N+ G ++G + +G +G N G+G NN G GN N
Sbjct: 200 GSGSGNSGNSSNNN-NSSGNSNYGSNNSGSGNGNSNSGNGNSGNGNGNNAGNSGNGNG-N 257
Query: 272 INGISGNLGRTVHVDDDLDEGSAISAGDSH 361
NG +GN G + + + G+ + G+ H
Sbjct: 258 SNGNNGN-GSNGNGNGNNGNGNNGNNGNGH 286
>U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical
protein F59A6.3 protein.
Length = 786
Score = 34.3 bits (75), Expect = 0.061
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +3
Query: 354 TVTGAPSTMAGP-TEMGS*XSTRAGPTEMGS*VXTRAGPTEMGTXVSTRXGP-TEMGSXV 527
+ T PST +GP T S ST +GP+ T T G+ ST GP T G +
Sbjct: 552 STTSGPSTSSGPSTASRSTVSTTSGPSTTSGPSTTSGPSTTSGSTKSTTSGPSTTSGKNI 611
Query: 528 ST 533
ST
Sbjct: 612 ST 613
Score = 29.5 bits (63), Expect = 1.7
Identities = 28/73 (38%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +3
Query: 351 VTVTGAPSTMAGPTEMGS*XSTRAGP-TEMGS*VXTRAGP-TEMGTXVSTRXGPTEMGSX 524
V+ T PST +GP ST +GP T GS T +GP T G +ST G GS
Sbjct: 571 VSTTSGPSTTSGP-------STTSGPSTTSGSTKSTTSGPSTTSGKNISTVSGKL-TGST 622
Query: 525 VSTXXXSXGDGLV 563
S S G V
Sbjct: 623 TSATISSAFGGNV 635
>Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 33.5 bits (73), Expect = 0.11
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 1/124 (0%)
Frame = +2
Query: 113 GSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLFGNVLNINGISGN 292
G DD GT+ G + G + G+ G + D + G+G+ N R G+ GN
Sbjct: 457 GDEDDDGTDG-GSKESGNNGKGKGKGSGDGDGNRNGNGDGNG---RPKGD--------GN 504
Query: 293 LGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRD-GLVGVNKSRSDGDGLVGXNKSRSN 469
+ +H DD D G + +G NG + D G DGDG N +
Sbjct: 505 IKINIHSPDDNDLLEKDENGPNGKGGAGNGNGDGDKDNNGKGNGTGDGDGDGNGNGNGLT 564
Query: 470 RDGH 481
DG+
Sbjct: 565 GDGN 568
Score = 31.1 bits (67), Expect = 0.57
Identities = 30/124 (24%), Positives = 42/124 (33%)
Frame = +2
Query: 110 SGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLFGNVLNINGISG 289
+G+ D G N + D G G N G G + N G N G G
Sbjct: 547 NGTGDGDGDGNGNGNGLTGDGNGTGDGDNNESGNGNGDGSDKNSGAGAGTKPENREGGDG 606
Query: 290 NLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGXNKSRSN 469
N T + D ++ S G G N+ G G + + DG G G +
Sbjct: 607 NGNGTGDGNGDGNDNGNGSKGLGTGSGDGKGEGNKSGTPGKSDGKEDGAGSNGSGNGKEG 666
Query: 470 RDGH 481
DG+
Sbjct: 667 -DGN 669
>Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 33.5 bits (73), Expect = 0.11
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 1/124 (0%)
Frame = +2
Query: 113 GSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLFGNVLNINGISGN 292
G DD GT+ G + G + G+ G + D + G+G+ N R G+ GN
Sbjct: 457 GDEDDDGTDG-GSKESGNNGKGKGKGSGDGDGNRNGNGDGNG---RPKGD--------GN 504
Query: 293 LGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRD-GLVGVNKSRSDGDGLVGXNKSRSN 469
+ +H DD D G + +G NG + D G DGDG N +
Sbjct: 505 IKINIHSPDDNDLLEKDENGPNGKGGAGNGNGDGDKDNNGKGNGTGDGDGDGNGNGNGLT 564
Query: 470 RDGH 481
DG+
Sbjct: 565 GDGN 568
Score = 31.1 bits (67), Expect = 0.57
Identities = 30/124 (24%), Positives = 42/124 (33%)
Frame = +2
Query: 110 SGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLFGNVLNINGISG 289
+G+ D G N + D G G N G G + N G N G G
Sbjct: 547 NGTGDGDGDGNGNGNGLTGDGNGTGDGDNNESGNGNGDGSDKNSGAGAGTKPENREGGDG 606
Query: 290 NLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGXNKSRSN 469
N T + D ++ S G G N+ G G + + DG G G +
Sbjct: 607 NGNGTGDGNGDGNDNGNGSKGLGTGSGDGKGEGNKSGTPGKSDGKEDGAGSNGSGNGKEG 666
Query: 470 RDGH 481
DG+
Sbjct: 667 -DGN 669
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 33.1 bits (72), Expect = 0.14
Identities = 35/144 (24%), Positives = 50/144 (34%), Gaps = 1/144 (0%)
Frame = +2
Query: 92 GLGKSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLFGNVLN 271
G G ++G +NN G G + G G N +GSG G GN
Sbjct: 37 GFGSGNAGGTGFGSSNNGGSGFGGNNNVGPRFGNGNAGGTGFGSGNAGGTGFG-SGNAGG 95
Query: 272 INGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKSRSD-GDGLVG 448
SGN G T + G+ +G++ F +G + GL N + G G G
Sbjct: 96 TGFGSGNAGGTGFGSGNAG-GTGFGSGNAGGTGFGSGNAGGTGLGSGNAGGTGFGSGNAG 154
Query: 449 XNKSRSNRDGHXXVNXXRSNRDGF 520
S G ++ GF
Sbjct: 155 GTGFGSGNAGGTGFGSGKAGGTGF 178
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 33.1 bits (72), Expect = 0.14
Identities = 35/144 (24%), Positives = 50/144 (34%), Gaps = 1/144 (0%)
Frame = +2
Query: 92 GLGKSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLFGNVLN 271
G G ++G +NN G G + G G N +GSG G GN
Sbjct: 37 GFGSGNAGGTGFGSSNNGGSGFGGNNNVGPRFGNGNAGGTGFGSGNAGGTGFG-SGNAGG 95
Query: 272 INGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKSRSD-GDGLVG 448
SGN G T + G+ +G++ F +G + GL N + G G G
Sbjct: 96 TGFGSGNAGGTGFGSGNAG-GTGFGSGNAGGTGFGSGNAGGTGLGSGNAGGTGFGSGNAG 154
Query: 449 XNKSRSNRDGHXXVNXXRSNRDGF 520
S G ++ GF
Sbjct: 155 GTGFGSGNAGGTGFGSGKAGGTGF 178
>Z46343-8|CAA86461.1| 549|Caenorhabditis elegans Hypothetical
protein F10F2.9 protein.
Length = 549
Score = 32.7 bits (71), Expect = 0.19
Identities = 32/137 (23%), Positives = 53/137 (38%)
Frame = +2
Query: 98 GKSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLFGNVLNIN 277
G++D + D+ NN + ++ +G RN D Y NN N N
Sbjct: 155 GENDDWNNGDQNNNN---NFNSKNNRMNKYGNRN-DGDDYNGNGNNQDNWNSGSNSGGYN 210
Query: 278 GISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGXNK 457
G G G + ++ +E + +++R + NN +N G N +DG+ G
Sbjct: 211 GGGGGSGGGSNWNNGDNENDGWNNNNNNRKSNNNNNNNYGNSWGTND--NDGNSWKGSGN 268
Query: 458 SRSNRDGHXXVNXXRSN 508
S N D + SN
Sbjct: 269 SNGNSDNWGGSSGSGSN 285
Score = 32.7 bits (71), Expect = 0.19
Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 13/145 (8%)
Frame = +2
Query: 122 DDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSG----ENNNFGQR------LFGNVLN 271
D G+NN G D++G + + G GSG +N+N+G +GN
Sbjct: 319 DQWGSNNNGGDNYGSELSNNWGGSNGGSGSNGGSGGGNTDNDNWGSNNGNSGGSWGN--G 376
Query: 272 INGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNN---GRSNRDGLVGVNKSRSDGDGL 442
G SG G D+D S G+ ++ N+ G +++G G N +R+DG G
Sbjct: 377 GTGGSGGSGGGNWGDNDNYGSSNKWNGNGNQDNDNDNFGGGYSKNG-YGSNNNRNDGWGS 435
Query: 443 VGXNKSRSNRDGHXXVNXXRSNRDG 517
N + +N + + SN G
Sbjct: 436 SSSNNNNNNNNNNNGGTGGYSNNGG 460
Score = 31.5 bits (68), Expect = 0.43
Identities = 35/113 (30%), Positives = 48/113 (42%)
Frame = +2
Query: 137 NNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLFGNVLNINGISGNLGRTVHVD 316
N+YG + G + G+ G N YGS +NN+G G+ NG SG G T D
Sbjct: 305 NSYGRNRGGGNEGGDQWGSNNNGGDNYGSELSNNWGGSNGGS--GSNGGSGG-GNT---D 358
Query: 317 DDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGXNKSRSNRD 475
+D + GS + G+S N G G G N +D G N+D
Sbjct: 359 ND-NWGS--NNGNSGGSWGNGGTGGSGGSGGGNWGDNDNYGSSNKWNGNGNQD 408
>Z35598-9|CAA84658.1| 549|Caenorhabditis elegans Hypothetical
protein F10F2.9 protein.
Length = 549
Score = 32.7 bits (71), Expect = 0.19
Identities = 32/137 (23%), Positives = 53/137 (38%)
Frame = +2
Query: 98 GKSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLFGNVLNIN 277
G++D + D+ NN + ++ +G RN D Y NN N N
Sbjct: 155 GENDDWNNGDQNNNN---NFNSKNNRMNKYGNRN-DGDDYNGNGNNQDNWNSGSNSGGYN 210
Query: 278 GISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGXNK 457
G G G + ++ +E + +++R + NN +N G N +DG+ G
Sbjct: 211 GGGGGSGGGSNWNNGDNENDGWNNNNNNRKSNNNNNNNYGNSWGTND--NDGNSWKGSGN 268
Query: 458 SRSNRDGHXXVNXXRSN 508
S N D + SN
Sbjct: 269 SNGNSDNWGGSSGSGSN 285
Score = 32.7 bits (71), Expect = 0.19
Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 13/145 (8%)
Frame = +2
Query: 122 DDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSG----ENNNFGQR------LFGNVLN 271
D G+NN G D++G + + G GSG +N+N+G +GN
Sbjct: 319 DQWGSNNNGGDNYGSELSNNWGGSNGGSGSNGGSGGGNTDNDNWGSNNGNSGGSWGN--G 376
Query: 272 INGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNN---GRSNRDGLVGVNKSRSDGDGL 442
G SG G D+D S G+ ++ N+ G +++G G N +R+DG G
Sbjct: 377 GTGGSGGSGGGNWGDNDNYGSSNKWNGNGNQDNDNDNFGGGYSKNG-YGSNNNRNDGWGS 435
Query: 443 VGXNKSRSNRDGHXXVNXXRSNRDG 517
N + +N + + SN G
Sbjct: 436 SSSNNNNNNNNNNNGGTGGYSNNGG 460
Score = 31.5 bits (68), Expect = 0.43
Identities = 35/113 (30%), Positives = 48/113 (42%)
Frame = +2
Query: 137 NNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLFGNVLNINGISGNLGRTVHVD 316
N+YG + G + G+ G N YGS +NN+G G+ NG SG G T D
Sbjct: 305 NSYGRNRGGGNEGGDQWGSNNNGGDNYGSELSNNWGGSNGGS--GSNGGSGG-GNT---D 358
Query: 317 DDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGXNKSRSNRD 475
+D + GS + G+S N G G G N +D G N+D
Sbjct: 359 ND-NWGS--NNGNSGGSWGNGGTGGSGGSGGGNWGDNDNYGSSNKWNGNGNQD 408
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 32.7 bits (71), Expect = 0.19
Identities = 35/144 (24%), Positives = 49/144 (34%), Gaps = 1/144 (0%)
Frame = +2
Query: 92 GLGKSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLFGNVLN 271
G G ++G +NN G G + G G N +GSG G GN
Sbjct: 37 GFGSGNAGGTGFGSSNNGGSGFGGNNNVGPRFGNGNAGGTGFGSGNAGGTGFG-SGNAGG 95
Query: 272 INGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKSRSD-GDGLVG 448
SGN G T + G+ G++ F +G + GL N + G G G
Sbjct: 96 TGFGSGNAGGTGFGSGNAG-GTGFGGGNAGGTGFGSGNAGGTGLGSGNAGGTGFGSGNAG 154
Query: 449 XNKSRSNRDGHXXVNXXRSNRDGF 520
S G ++ GF
Sbjct: 155 GTGFGSGNAGGTGFGSGKAGGTGF 178
>Z92849-5|CAB07430.1| 163|Caenorhabditis elegans Hypothetical
protein H12D21.6 protein.
Length = 163
Score = 31.9 bits (69), Expect = 0.33
Identities = 24/93 (25%), Positives = 38/93 (40%)
Frame = +2
Query: 101 KSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLFGNVLNING 280
+S G + + + G G + GF N + + G G NN Q FG + +G
Sbjct: 63 QSGFGGQSQQSSGFGGSSSNGMGSSNSQGGFGNQESQSSGMGSNNQ-RQSGFGGQMGSSG 121
Query: 281 ISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNN 379
SG+ G + GS+ +G S G N+
Sbjct: 122 SSGSSGSSSQSGFGGQMGSSGQSGSSSNGMGNS 154
>AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical
protein F15E6.1 protein.
Length = 1655
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 298 SEIAADPVDVEDIAEEPLPEVVILPTP 218
S AA P DV D A E P+V++ PTP
Sbjct: 556 SAAAAAPEDVPDAAPEDPPKVILKPTP 582
>U13642-8|AAG00040.1| 428|Caenorhabditis elegans Similar to
transporter of divalentcations protein 1, isoform a
protein.
Length = 428
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +2
Query: 98 GKSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFG 244
G S +D G +++G DD G D G H D G N+N G
Sbjct: 360 GHGHSHDHNDHG-HSHGHDDHGHDSHGHSHDHNEHDHGHSHGGNNDNHG 407
>U13642-7|AAZ32791.1| 446|Caenorhabditis elegans Similar to
transporter of divalentcations protein 1, isoform b
protein.
Length = 446
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +2
Query: 98 GKSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFG 244
G S +D G +++G DD G D G H D G N+N G
Sbjct: 378 GHGHSHDHNDHG-HSHGHDDHGHDSHGHSHDHNEHDHGHSHGGNNDNHG 425
>AF036693-4|AAK29786.1| 360|Caenorhabditis elegans Hypothetical
protein C49A9.6 protein.
Length = 360
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 209 RKYGSGENNNFGQRLFGNVLNINGISGNLGRTVHVD 316
RKYGS N FG+ L G+ N + + G+ VH++
Sbjct: 308 RKYGSAFNKYFGEILEGDSENTKLSTDHNGKMVHIE 343
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 29.1 bits (62), Expect = 2.3
Identities = 21/74 (28%), Positives = 30/74 (40%)
Frame = +2
Query: 188 GFRNVDFRKYGSGENNNFGQRLFGNVLNINGISGNLGRTVHVDDDLDEGSAISAGDSHRG 367
G R + R +G G R + I G+ G G + D +G++ G G
Sbjct: 302 GPRGKEGRPGNAGPPGFKGDRGLDGLGGIPGLPGQKGEAGYPGRDGPKGNSGPPGPPGGG 361
Query: 368 TFNNGRSNRDGLVG 409
TFN+G GL G
Sbjct: 362 TFNDGAPGPPGLPG 375
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 29.1 bits (62), Expect = 2.3
Identities = 21/74 (28%), Positives = 30/74 (40%)
Frame = +2
Query: 188 GFRNVDFRKYGSGENNNFGQRLFGNVLNINGISGNLGRTVHVDDDLDEGSAISAGDSHRG 367
G R + R +G G R + I G+ G G + D +G++ G G
Sbjct: 301 GPRGKEGRPGNAGPPGFKGDRGLDGLGGIPGLPGQKGEAGYPGRDGPKGNSGPPGPPGGG 360
Query: 368 TFNNGRSNRDGLVG 409
TFN+G GL G
Sbjct: 361 TFNDGAPGPPGLPG 374
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 29.1 bits (62), Expect = 2.3
Identities = 21/74 (28%), Positives = 30/74 (40%)
Frame = +2
Query: 188 GFRNVDFRKYGSGENNNFGQRLFGNVLNINGISGNLGRTVHVDDDLDEGSAISAGDSHRG 367
G R + R +G G R + I G+ G G + D +G++ G G
Sbjct: 301 GPRGKEGRPGNAGPPGFKGDRGLDGLGGIPGLPGQKGEAGYPGRDGPKGNSGPPGPPGGG 360
Query: 368 TFNNGRSNRDGLVG 409
TFN+G GL G
Sbjct: 361 TFNDGAPGPPGLPG 374
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 29.1 bits (62), Expect = 2.3
Identities = 21/74 (28%), Positives = 30/74 (40%)
Frame = +2
Query: 188 GFRNVDFRKYGSGENNNFGQRLFGNVLNINGISGNLGRTVHVDDDLDEGSAISAGDSHRG 367
G R + R +G G R + I G+ G G + D +G++ G G
Sbjct: 302 GPRGKEGRPGNAGPPGFKGDRGLDGLGGIPGLPGQKGEAGYPGRDGPKGNSGPPGPPGGG 361
Query: 368 TFNNGRSNRDGLVG 409
TFN+G GL G
Sbjct: 362 TFNDGAPGPPGLPG 375
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 29.1 bits (62), Expect = 2.3
Identities = 21/74 (28%), Positives = 30/74 (40%)
Frame = +2
Query: 188 GFRNVDFRKYGSGENNNFGQRLFGNVLNINGISGNLGRTVHVDDDLDEGSAISAGDSHRG 367
G R + R +G G R + I G+ G G + D +G++ G G
Sbjct: 338 GPRGKEGRPGNAGPPGFKGDRGLDGLGGIPGLPGQKGEAGYPGRDGPKGNSGPPGPPGGG 397
Query: 368 TFNNGRSNRDGLVG 409
TFN+G GL G
Sbjct: 398 TFNDGAPGPPGLPG 411
>Z93381-1|CAB07604.1| 509|Caenorhabditis elegans Hypothetical
protein F28G4.1 protein.
Length = 509
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 137 NNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQR 250
N Y ++F ED+ G H + ++ F +G N GQ+
Sbjct: 422 NQYNPENFSEDKIGSRHAYSDIPF---SAGPRNCIGQK 456
>AF039712-1|AAK21402.2| 239|Caenorhabditis elegans 2 (zwei)
ig-domain protein protein7 protein.
Length = 239
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 251 LFGNVLNINGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGR 385
L+ N+ N+ + NLG H+D + E + +S G +GT N G+
Sbjct: 46 LYANIQNLWCGAQNLGE--HIDVEYGEFTRLSDGKVFKGTVNQGK 88
>Z68105-5|CAA92123.2| 729|Caenorhabditis elegans Hypothetical
protein F13E6.2 protein.
Length = 729
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 293 LGRTVHVDDDLDEGSAISAGDSHRGTFNN 379
+ RT++V+DD G S GDS +GT N+
Sbjct: 698 IDRTLYVEDD---GDGTSLGDSKKGTLNS 723
>AL009066-1|CAA15625.2| 729|Caenorhabditis elegans Hypothetical
protein F13E6.2 protein.
Length = 729
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 293 LGRTVHVDDDLDEGSAISAGDSHRGTFNN 379
+ RT++V+DD G S GDS +GT N+
Sbjct: 698 IDRTLYVEDD---GDGTSLGDSKKGTLNS 723
>AC025727-4|AAG23388.3| 463|Caenorhabditis elegans Hypothetical
protein Y73E7A.2 protein.
Length = 463
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +2
Query: 245 QRLFGNVLNINGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRD 397
+ LFG++ I+G+ GN ++ ++D DE I D + N D
Sbjct: 63 KELFGDISEISGLQGNFDKS-ESEEDEDEEEKIDNFDESEPEIEDEEENED 112
>Z68315-6|CAA92671.1| 219|Caenorhabditis elegans Hypothetical
protein F28C6.5 protein.
Length = 219
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -2
Query: 316 INVNRPSEIAADPVDVEDIAEEPL-PEVVILPTPVFPE 206
++V P ++ A P+D E + EPL P +ILP+ + E
Sbjct: 81 LHVPEPQDVVAVPLDEEALHGEPLFPPELILPSELAAE 118
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 27.5 bits (58), Expect = 7.0
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = +2
Query: 95 LGKSDSGSRDDRGTNNY-GLDDFGEDRAGELHGFRNVDFRKYGSGEN--NNFGQRLFGNV 265
+G D SRD G NNY F +D E+ R + ++ N F QR+ NV
Sbjct: 70 MGSWDEYSRDTSGENNYHHTSSFDDDLLLEIDSSRGAAVARLDRTQDDLNKFRQRIDNNV 129
>U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform a
protein.
Length = 1081
Score = 27.5 bits (58), Expect = 7.0
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = -2
Query: 400 PISVGPAIVEGAPVTV-TGADGTPLVQIIINVNRPSEIAADPVDVEDIAEEPLPEVVILP 224
P V P + PVT AD P V + SE +PVDV+ P+V + P
Sbjct: 555 PARVPPQVPSQVPVTGGVAADEPPPPCSYSPVAQSSESKIEPVDVKPRVAPVPPQVPVTP 614
Query: 223 T 221
T
Sbjct: 615 T 615
>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform b
protein.
Length = 1647
Score = 27.5 bits (58), Expect = 7.0
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = -2
Query: 400 PISVGPAIVEGAPVTV-TGADGTPLVQIIINVNRPSEIAADPVDVEDIAEEPLPEVVILP 224
P V P + PVT AD P V + SE +PVDV+ P+V + P
Sbjct: 555 PARVPPQVPSQVPVTGGVAADEPPPPCSYSPVAQSSESKIEPVDVKPRVAPVPPQVPVTP 614
Query: 223 T 221
T
Sbjct: 615 T 615
>Z69383-1|CAA93412.1| 409|Caenorhabditis elegans Hypothetical
protein F13E9.4 protein.
Length = 409
Score = 27.1 bits (57), Expect = 9.3
Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 4/101 (3%)
Frame = +2
Query: 80 ASVEGLGKSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRN----VDFRKYGSGENNNFGQ 247
AS+EG+ + S S +DR + L L +N + + GS N+N
Sbjct: 308 ASIEGIQSNTSSSENDRQSAFQALQQAHPMEYSVLTSLQNQHEQTQYARMGSNGNSNSN- 366
Query: 248 RLFGNVLNINGISGNLGRTVHVDDDLDEGSAISAGDSHRGT 370
+GN N N GN G + ++ + +A SA + T
Sbjct: 367 --YGN-SNFNSNYGNNGYNHNGNNYFESTTATSAATKKKTT 404
>U93846-1|AAB58268.1| 768|Caenorhabditis elegans elongation
factor-2 kinase EFK-1A isoform protein.
Length = 768
Score = 27.1 bits (57), Expect = 9.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 92 GLGKSDSGSRDDRGTNNYGLDDFGED 169
G G+ ++G R D+G L++FG D
Sbjct: 615 GFGEQENGIRADKGQKPCDLEEFGSD 640
>U10414-7|AAN63383.1| 768|Caenorhabditis elegans Elongation factor
kinase protein1, isoform a protein.
Length = 768
Score = 27.1 bits (57), Expect = 9.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 92 GLGKSDSGSRDDRGTNNYGLDDFGED 169
G G+ ++G R D+G L++FG D
Sbjct: 615 GFGEQENGIRADKGQKPCDLEEFGSD 640
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,858,631
Number of Sequences: 27780
Number of extensions: 210536
Number of successful extensions: 832
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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