Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1f19r
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    27   4.6  
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   4.6  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    26   6.1  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    26   8.1  

>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = -2

Query: 458 IGDMLSKTSSFFTDNLSQDDPYI 390
           + + +SKT++  +DNL +DDPYI
Sbjct: 568 VDNSISKTATIVSDNL-KDDPYI 589


>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -2

Query: 224 RIQPPLVFTPCPQKNNNSWHLPYKGEDEELGLNIVNDGTPNLNN 93
           +IQP   F    Q+  N+  +PY  E+E+L L  +  GT + NN
Sbjct: 183 QIQPLSNFDISQQEYLNNTRIPY--ENEDLHLQHITQGTTDDNN 224


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 830 KQITQKLPKYNGRCQSCSKTLDCLKLSD 747
           + + + + KYNG  Q+  K   C++L+D
Sbjct: 417 RSLGETMSKYNGLIQALQKLQTCMRLND 444


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
 Frame = -2

Query: 773  TLDCLKLSDEEFKTLQSNIKDKLIIGSDLFLKTSP-------QELEKFLNFIEKTGPYDI 615
            T D + +   EF++L    + +++   D+  ++SP       + L+K  N +  TG    
Sbjct: 825  TEDGISMEGPEFRSLSDEKRLEILPKLDVLARSSPLDKQLLIEGLQKLGNVVAVTGDGTN 884

Query: 614  ILDAL---NVSYSIGKQSQATGAKALHIVV 534
               AL   NV +S+GK       +A  I++
Sbjct: 885  DAPALKKANVGFSMGKSGTEVAKEASDIIL 914


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,751,927
Number of Sequences: 5004
Number of extensions: 84512
Number of successful extensions: 195
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)