Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1f19f
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    31   0.20 
SPAC607.05 |rpn9||19S proteasome regulatory subunit Rpn9|Schizos...    28   1.4  
SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce...    25   7.5  
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    25   9.9  
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    25   9.9  
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    25   9.9  

>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 1/127 (0%)
 Frame = +3

Query: 285 VYKSAVKEPAPIKCVSSQIAYLESELEKSSFNWNELKKNILFERGNINEKNFEGVLLKFM 464
           +Y   + +   I    + + YLE+   K+    N   + ++  R ++ + NF   L + +
Sbjct: 615 LYTLLISDRYGINTNQALLCYLENSTIKNLVASNSQLRGLIMTRNSLAQHNFRRSLPEMI 674

Query: 465 VQRKKFDAANSF-VCYINKKNEELSLGAINGLLMLYYEMSKENKLIDEGKTFILKTYRDL 641
             RK  D  +    C   +K  +  +   NGL   + E  +E K  DE   F  K  + L
Sbjct: 675 SNRKICDHCSLVSECLFFQKMSDKGVANSNGLTESWNEWMREVK--DEDLEFYKKWEKLL 732

Query: 642 YKKYKVL 662
            ++ ++L
Sbjct: 733 NQEERLL 739


>SPAC607.05 |rpn9||19S proteasome regulatory subunit
           Rpn9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 212 KLLLITHFSWLISLLLNKGINDICRYNNVLGSINK 108
           +LL+ T   WL  L++   + D+  +  ++G INK
Sbjct: 228 ELLVGTQHEWLHDLVIAMNVGDLPLFERLMGQINK 262


>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +1

Query: 10  ESSVSEKCGLGLGLFTPLINLVKCM 84
           E+S SEK  L L LF  +I+L KC+
Sbjct: 59  ENSKSEKRKLQLELFQEIIDLKKCI 83


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 106 YLFIEPRTLLYLQISLIPLFNSKLI 180
           +LF+ P TLL+L IS + +  ++L+
Sbjct: 260 WLFLNPTTLLFLLISFVYIKPARLL 284


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 80  VCMYVLRLNIYLLNLGHCCTYKYH 151
           + + V+ +N +   L  CC Y YH
Sbjct: 30  IILSVIFINFFFFYLCRCCVYFYH 53


>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 47  PRPRPHFSLTELSN 6
           PRPRP F LTE+ +
Sbjct: 562 PRPRPTFQLTEIDS 575


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,521,433
Number of Sequences: 5004
Number of extensions: 51565
Number of successful extensions: 141
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)