Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1f17r
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|...    87   3e-18
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe...    36   0.006
SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosacchar...    28   1.5  
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    27   3.4  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    26   5.9  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    26   7.8  

>SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 156

 Score = 87.0 bits (206), Expect = 3e-18
 Identities = 47/125 (37%), Positives = 73/125 (58%), Gaps = 3/125 (2%)
 Frame = -3

Query: 831 RFVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHN--T 658
           +F++  VPGAFTP CS + +PGY+ N  +  + G++ I  V+VND +V  AW    +   
Sbjct: 29  KFIIVGVPGAFTPPCS-SQVPGYIANEKQFAAKGISGIYVVAVNDVFVTKAWKKSFDGGE 87

Query: 657 KGKVRMLADPSGNFIKALDLGTNLPP-LGGFRSKRFSMVIVDSKVQDLNVEPDGTGLSCS 481
           +  V  +AD +G F KA D G +    LG  RSKR++ V+ + KV  + +E + T +  S
Sbjct: 88  QSGVHFVADWNGEFTKAFDAGFDASGLLGPLRSKRYAAVVENGKVVKVFIENEVTDVDIS 147

Query: 480 LADKI 466
            ADK+
Sbjct: 148 SADKV 152


>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 195

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 24/74 (32%), Positives = 38/74 (51%)
 Frame = -3

Query: 825 VLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNTKGKV 646
           V+FA P A TPGC+K    G+  N  K+++    E++ +S +      A+  + N     
Sbjct: 77  VIFAYPKASTPGCTKQGC-GFRDNYPKIQASDY-EVLGLSFDTSKAQKAFKDKQNF--PY 132

Query: 645 RMLADPSGNFIKAL 604
            +L+DP G  IK L
Sbjct: 133 HLLSDPKGELIKKL 146


>SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 413

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 244 QISRQFSWHFDCALVTFNTAFASIYLGS*TPREKDKLR 357
           Q++R + WH D AL  +N    +  L    P+    LR
Sbjct: 175 QVTRFYRWHIDAALYDYNPPVVTTLLAVNAPQGTQTLR 212


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 715 HYFSNSIRFQFICVLYVSRQVCFRTSRGEG 804
           H+   S+RF+ +  LY    VC  TS  +G
Sbjct: 365 HFLHKSVRFEELVALYNVSDVCLITSTRDG 394


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/57 (24%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = +3

Query: 63  KMLLYIF-EVYSYINSKSKRSQTILFKSIVRCVRLINSVALYVKLLS*QPKQINNMK 230
           ++ +Y+F E+Y   +  S  +  ++ +S+VR  +   +++LY K+++ +PK   + K
Sbjct: 265 QIAIYMFDEMYRTHHWSSFTACRLMIESLVRQNKFEEAISLYKKIIAKRPKIARDKK 321


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +1

Query: 727 NSIRFQFICVLYVSRQVCFRTSRG 798
           NSI+  F+C++Y+S+ + ++   G
Sbjct: 522 NSIKSPFLCLIYISKDMEYKLLHG 545


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,430,617
Number of Sequences: 5004
Number of extensions: 70729
Number of successful extensions: 169
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)