Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1f17r
(854 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048 107 8e-24
06_03_0811 + 24830496-24831194 100 2e-21
01_01_1148 - 9113728-9113835,9113952-9114035,9114831-9114992,911... 100 2e-21
02_01_0691 - 5167260-5167937 96 3e-20
01_06_0928 + 33085403-33089224 32 0.51
08_02_1402 - 26786011-26786128,26786263-26786516,26787505-267877... 31 0.89
11_03_0128 - 10437407-10438049,10438097-10438272 29 3.6
09_06_0228 + 21706118-21706252,21706327-21706406,21706742-217068... 29 3.6
08_02_0546 - 18474217-18475133,18475207-18475396,18475870-184763... 29 3.6
08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034 29 3.6
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 29 3.6
06_01_0861 + 6527279-6527582,6527619-6527719,6527817-6528042,652... 29 3.6
06_03_0012 + 15383628-15383823,15383915-15384100,15384326-15385518 28 8.3
>01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048
Length = 162
Score = 107 bits (258), Expect = 8e-24
Identities = 52/113 (46%), Positives = 73/113 (64%), Gaps = 1/113 (0%)
Frame = -3
Query: 834 RRFVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNTK 655
++ VLF VPGAFTP CS H+PG++ A++LK+ GV +I+ VSVNDP+VM AW +
Sbjct: 36 KKVVLFGVPGAFTPTCSNQHVPGFINQAEQLKAKGVDDILLVSVNDPFVMKAWAKSYPEN 95
Query: 654 GKVRMLADPSGNFIKALDLGTNLPPLG-GFRSKRFSMVIVDSKVQDLNVEPDG 499
V+ LAD G + KAL L +L G G RS+RF+++ + KV N+E G
Sbjct: 96 KHVKFLADGLGTYTKALGLELDLSEKGLGIRSRRFALLADNLKVTVANIEEGG 148
>06_03_0811 + 24830496-24831194
Length = 232
Score = 100 bits (239), Expect = 2e-21
Identities = 50/127 (39%), Positives = 79/127 (62%), Gaps = 3/127 (2%)
Frame = -3
Query: 834 RRFVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNTK 655
++ VLFAVPGAFTP C++ H+PG+V A +L++ GV + CVSVND +VM AW
Sbjct: 104 KKVVLFAVPGAFTPTCTQKHVPGFVAKAGELRAKGVDAVACVSVNDAFVMRAWKESLGVG 163
Query: 654 GKVRMLADPSGNFIKALDLGTNL--PPLG-GFRSKRFSMVIVDSKVQDLNVEPDGTGLSC 484
+V +L+D +G +A+ + +L P G G RS+R++++ D V+ LN+E G +
Sbjct: 164 DEVLLLSDGNGELARAMGVELDLSDKPAGLGVRSRRYALLAEDGVVKVLNLEEGGAFTTS 223
Query: 483 SLADKIK 463
S + +K
Sbjct: 224 SAEEMLK 230
>01_01_1148 -
9113728-9113835,9113952-9114035,9114831-9114992,
9115120-9115224,9115584-9116216,9117412-9117496,
9118426-9118520,9119083-9119241,9119968-9119997,
9120100-9120306
Length = 555
Score = 100 bits (239), Expect = 2e-21
Identities = 47/110 (42%), Positives = 67/110 (60%), Gaps = 1/110 (0%)
Frame = -3
Query: 834 RRFVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNTK 655
++ V+F +PGA+T CS+ H+P Y N DKLK+ GV ++CVSVNDPY + W + K
Sbjct: 71 KKVVIFGLPGAYTGVCSQAHVPSYKNNIDKLKAKGVDSVICVSVNDPYALNGWAEKLQAK 130
Query: 654 GKVRMLADPSGNFIKALDLGTNL-PPLGGFRSKRFSMVIVDSKVQDLNVE 508
+ D G+F K+LDL +L L G RS R+S + D K++ NVE
Sbjct: 131 DAIEFYGDFDGSFHKSLDLEVDLSAALLGRRSHRWSAFVDDGKIKAFNVE 180
>02_01_0691 - 5167260-5167937
Length = 225
Score = 96.3 bits (229), Expect = 3e-20
Identities = 53/128 (41%), Positives = 78/128 (60%), Gaps = 4/128 (3%)
Frame = -3
Query: 834 RRFVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNT- 658
R+ VLFAVPGAFTP CS+ HLPG+++ A +L + GV I CVSVND +VM AW
Sbjct: 96 RKAVLFAVPGAFTPTCSQKHLPGFIEKAGELHAKGVDAIACVSVNDAFVMRAWKESLGLG 155
Query: 657 KGKVRMLADPSGNFIKALDLGTNL--PPLG-GFRSKRFSMVIVDSKVQDLNVEPDGTGLS 487
V +L+D + +AL + +L P+G G RS+R++++ D V+ LN+E G +
Sbjct: 156 DADVLLLSDGNLELTRALGVEMDLSDKPMGLGVRSRRYALLADDGVVKVLNLEEGGAFTT 215
Query: 486 CSLADKIK 463
S + +K
Sbjct: 216 SSAEEMLK 223
>01_06_0928 + 33085403-33089224
Length = 1273
Score = 32.3 bits (70), Expect = 0.51
Identities = 26/87 (29%), Positives = 39/87 (44%)
Frame = +2
Query: 479 REQDRPVPSGSTFRSWTLLSTMTIENLLERKPPSGGRLVPRSRALMKLPLGSASIRTFPL 658
+E+D + T +W + + K SG LVP S L +L L S SI L
Sbjct: 900 KERDEALVKEDTIEAWLCCHKERMRFIYSAK--SGLPLVPPS-GLCELYLSSCSITDGAL 956
Query: 659 VLC*APQAAITYGSLTDTHTISATPSD 739
LC ++ SLT+ T++ PS+
Sbjct: 957 ALCIGGLTSLRELSLTNIMTLTTLPSE 983
>08_02_1402 -
26786011-26786128,26786263-26786516,26787505-26787732,
26788920-26789759
Length = 479
Score = 31.5 bits (68), Expect = 0.89
Identities = 19/46 (41%), Positives = 22/46 (47%)
Frame = +3
Query: 474 RRENKTGQCHRAPHSDLGPCCQR*PSRTFWSGNLRAAADWCPGPEP 611
RRE +T H PHSDL P R P RT + + R P P P
Sbjct: 187 RREAETAHPHTQPHSDLSP---RTPRRTSAAASGRLQEKQAPPPLP 229
>11_03_0128 - 10437407-10438049,10438097-10438272
Length = 272
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 635 PIPAATSSRLWTWAPICRRSEVSAPKGSRWSSLTA 531
P P A+S L +W C RS +S+P S W TA
Sbjct: 233 PSPTASSESLGSWGSGC-RSHLSSPTCSSWWRTTA 266
>09_06_0228 +
21706118-21706252,21706327-21706406,21706742-21706866,
21706960-21707084,21707162-21707380,21707458-21707580,
21707661-21707761,21707847-21707899,21707972-21708174
Length = 387
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +1
Query: 493 ASAIGLHIQILDLAVNDDHREPFGAETSERRQIGAQVQSLDEVAAGIG*HTH 648
A +G + I+ AV D+ PFG ++S R +G SL G+ TH
Sbjct: 113 AGNLGNLLLIVVPAVCDEDGNPFGKDSSRCRSLGLSYSSLSMALGGLYIWTH 164
>08_02_0546 -
18474217-18475133,18475207-18475396,18475870-18476313,
18476629-18477495,18478858-18479367
Length = 975
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -1
Query: 281 AQSKCQENCREICVNSRFHVIY--LLRLLAEQFYV*GNAINQ 162
+QS CQE R++C + VIY L +L + Y A N+
Sbjct: 767 SQSACQEGIRQLCETFAYKVIYNDLSHVLLDSLYAGDTASNR 808
>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
Length = 930
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -3
Query: 582 PLGGFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLADKI 466
PL G S F+ +I S +Q +V+ DGT SC + D I
Sbjct: 456 PLEGVGSAYFNELINRSMIQPADVQYDGTVQSCRVHDMI 494
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 29.5 bits (63), Expect = 3.6
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = -3
Query: 825 VLFAVPGAFTPGCSK--THLPGYVQNADKLKSDGVAEIVC--VSVNDPYVMAAWGAQHNT 658
+LF+ PG FTP C+ + GY + DK + + I C V + ++ +
Sbjct: 69 ILFSHPGDFTPVCTTELAAMAGYAKEFDK-RGVKLLGISCDDVQSHKDWIKDIEAYKPGN 127
Query: 657 KGKVRMLADPSGNFIKALDL 598
+ ++ADPS IK L++
Sbjct: 128 RVTYPIMADPSREAIKQLNM 147
>06_01_0861 +
6527279-6527582,6527619-6527719,6527817-6528042,
6528132-6528475,6528624-6528989,6529080-6529347,
6529479-6529696
Length = 608
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = -3
Query: 816 AVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAW-GAQHNT 658
A+ G P C H+ + K +S V V + YV+A W G+ H++
Sbjct: 140 ALDGTHIPACVPMHMQDRFRGRKKFQSQNVLAAVDFDLRFLYVLAGWEGSAHDS 193
>06_03_0012 + 15383628-15383823,15383915-15384100,15384326-15385518
Length = 524
Score = 28.3 bits (60), Expect = 8.3
Identities = 23/71 (32%), Positives = 31/71 (43%)
Frame = -3
Query: 828 FVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNTKGK 649
FV + GAF K P Y + D L GV E++ SV+ P + A HN
Sbjct: 172 FVNPSSAGAFDGNGEKKIRP-YARKDDFLLP-GVVEVIIKSVSSPAIAPACTRTHNVPAV 229
Query: 648 VRMLADPSGNF 616
V +A + NF
Sbjct: 230 VFSVAGYTDNF 240
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,665,128
Number of Sequences: 37544
Number of extensions: 496186
Number of successful extensions: 1207
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1206
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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