Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1f17r
         (854 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT003526-1|AAO39530.1|  190|Drosophila melanogaster RE19605p pro...   192   4e-49
BT001575-1|AAN71330.1|  190|Drosophila melanogaster RE23139p pro...   192   4e-49
AY051983-1|AAK93407.1|  190|Drosophila melanogaster LD45324p pro...   192   4e-49
AE014297-2444|AAO41575.1|  190|Drosophila melanogaster CG7217-PB...   192   4e-49
AE014297-2443|AAF55497.2|  190|Drosophila melanogaster CG7217-PA...   192   4e-49
BT022231-1|AAY54647.1|  133|Drosophila melanogaster IP12465p pro...    40   0.006
AJ277789-1|CAB93525.1| 1738|Drosophila melanogaster mismatch dep...    30   4.7  
AE014135-90|AAF59338.1| 1738|Drosophila melanogaster CG1981-PA p...    30   4.7  

>BT003526-1|AAO39530.1|  190|Drosophila melanogaster RE19605p
           protein.
          Length = 190

 Score =  192 bits (469), Expect = 4e-49
 Identities = 87/127 (68%), Positives = 106/127 (83%), Gaps = 1/127 (0%)
 Frame = -3

Query: 834 RRFVLFAVPGAFTPGCSKTHLPGYVQNADKLKS-DGVAEIVCVSVNDPYVMAAWGAQHNT 658
           ++ ++F VPGAFTPGCSKTHLPGYV +AD+LKS  GV EIVCVSVNDP+VM+AWG +H  
Sbjct: 64  KKVIIFGVPGAFTPGCSKTHLPGYVSSADELKSKQGVDEIVCVSVNDPFVMSAWGKEHGA 123

Query: 657 KGKVRMLADPSGNFIKALDLGTNLPPLGGFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSL 478
            GKVR+LADP+G F KALD+  +LPPLGG RSKR+S+V+ + KV +LNVEPDGTGLSCSL
Sbjct: 124 AGKVRLLADPAGGFTKALDVTIDLPPLGGVRSKRYSLVVENGKVTELNVEPDGTGLSCSL 183

Query: 477 ADKIKVK 457
           A+ I  K
Sbjct: 184 ANNIGKK 190


>BT001575-1|AAN71330.1|  190|Drosophila melanogaster RE23139p
           protein.
          Length = 190

 Score =  192 bits (469), Expect = 4e-49
 Identities = 87/127 (68%), Positives = 106/127 (83%), Gaps = 1/127 (0%)
 Frame = -3

Query: 834 RRFVLFAVPGAFTPGCSKTHLPGYVQNADKLKS-DGVAEIVCVSVNDPYVMAAWGAQHNT 658
           ++ ++F VPGAFTPGCSKTHLPGYV +AD+LKS  GV EIVCVSVNDP+VM+AWG +H  
Sbjct: 64  KKVIIFGVPGAFTPGCSKTHLPGYVSSADELKSKQGVDEIVCVSVNDPFVMSAWGKEHGA 123

Query: 657 KGKVRMLADPSGNFIKALDLGTNLPPLGGFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSL 478
            GKVR+LADP+G F KALD+  +LPPLGG RSKR+S+V+ + KV +LNVEPDGTGLSCSL
Sbjct: 124 AGKVRLLADPAGGFTKALDVTIDLPPLGGVRSKRYSLVVENGKVTELNVEPDGTGLSCSL 183

Query: 477 ADKIKVK 457
           A+ I  K
Sbjct: 184 ANNIGKK 190


>AY051983-1|AAK93407.1|  190|Drosophila melanogaster LD45324p
           protein.
          Length = 190

 Score =  192 bits (469), Expect = 4e-49
 Identities = 87/127 (68%), Positives = 106/127 (83%), Gaps = 1/127 (0%)
 Frame = -3

Query: 834 RRFVLFAVPGAFTPGCSKTHLPGYVQNADKLKS-DGVAEIVCVSVNDPYVMAAWGAQHNT 658
           ++ ++F VPGAFTPGCSKTHLPGYV +AD+LKS  GV EIVCVSVNDP+VM+AWG +H  
Sbjct: 64  KKVIIFGVPGAFTPGCSKTHLPGYVSSADELKSKQGVDEIVCVSVNDPFVMSAWGKEHGA 123

Query: 657 KGKVRMLADPSGNFIKALDLGTNLPPLGGFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSL 478
            GKVR+LADP+G F KALD+  +LPPLGG RSKR+S+V+ + KV +LNVEPDGTGLSCSL
Sbjct: 124 AGKVRLLADPAGGFTKALDVTIDLPPLGGVRSKRYSLVVENGKVTELNVEPDGTGLSCSL 183

Query: 477 ADKIKVK 457
           A+ I  K
Sbjct: 184 ANNIGKK 190


>AE014297-2444|AAO41575.1|  190|Drosophila melanogaster CG7217-PB,
           isoform B protein.
          Length = 190

 Score =  192 bits (469), Expect = 4e-49
 Identities = 87/127 (68%), Positives = 106/127 (83%), Gaps = 1/127 (0%)
 Frame = -3

Query: 834 RRFVLFAVPGAFTPGCSKTHLPGYVQNADKLKS-DGVAEIVCVSVNDPYVMAAWGAQHNT 658
           ++ ++F VPGAFTPGCSKTHLPGYV +AD+LKS  GV EIVCVSVNDP+VM+AWG +H  
Sbjct: 64  KKVIIFGVPGAFTPGCSKTHLPGYVSSADELKSKQGVDEIVCVSVNDPFVMSAWGKEHGA 123

Query: 657 KGKVRMLADPSGNFIKALDLGTNLPPLGGFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSL 478
            GKVR+LADP+G F KALD+  +LPPLGG RSKR+S+V+ + KV +LNVEPDGTGLSCSL
Sbjct: 124 AGKVRLLADPAGGFTKALDVTIDLPPLGGVRSKRYSLVVENGKVTELNVEPDGTGLSCSL 183

Query: 477 ADKIKVK 457
           A+ I  K
Sbjct: 184 ANNIGKK 190


>AE014297-2443|AAF55497.2|  190|Drosophila melanogaster CG7217-PA,
           isoform A protein.
          Length = 190

 Score =  192 bits (469), Expect = 4e-49
 Identities = 87/127 (68%), Positives = 106/127 (83%), Gaps = 1/127 (0%)
 Frame = -3

Query: 834 RRFVLFAVPGAFTPGCSKTHLPGYVQNADKLKS-DGVAEIVCVSVNDPYVMAAWGAQHNT 658
           ++ ++F VPGAFTPGCSKTHLPGYV +AD+LKS  GV EIVCVSVNDP+VM+AWG +H  
Sbjct: 64  KKVIIFGVPGAFTPGCSKTHLPGYVSSADELKSKQGVDEIVCVSVNDPFVMSAWGKEHGA 123

Query: 657 KGKVRMLADPSGNFIKALDLGTNLPPLGGFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSL 478
            GKVR+LADP+G F KALD+  +LPPLGG RSKR+S+V+ + KV +LNVEPDGTGLSCSL
Sbjct: 124 AGKVRLLADPAGGFTKALDVTIDLPPLGGVRSKRYSLVVENGKVTELNVEPDGTGLSCSL 183

Query: 477 ADKIKVK 457
           A+ I  K
Sbjct: 184 ANNIGKK 190


>BT022231-1|AAY54647.1|  133|Drosophila melanogaster IP12465p
           protein.
          Length = 133

 Score = 39.5 bits (88), Expect = 0.006
 Identities = 22/34 (64%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = +2

Query: 665 C*APQAAITYGSLTDTHTISATPS-DFSLSAFCT 763
           C  PQA IT GSLT+T TIS+TP  DFS SA  T
Sbjct: 100 CSLPQADITKGSLTETQTISSTPCLDFSSSAELT 133


>AJ277789-1|CAB93525.1| 1738|Drosophila melanogaster mismatch
           depedent uracil/thymineDNA glycosylase protein.
          Length = 1738

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +1

Query: 559 FGAETSERRQ-IGAQVQSLDEVAAGIG*HTHLSFSVVLSSPSRHHI-RVINRHAH 717
           FGA  SE  Q +  Q Q L  +   +  H HL  S  +S  ++HH+ + I++H H
Sbjct: 447 FGAHQSEHHQRLNQQQQPLQHL---LDCHGHLEQSTPISQQNQHHLSQQIHQHQH 498


>AE014135-90|AAF59338.1| 1738|Drosophila melanogaster CG1981-PA
           protein.
          Length = 1738

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +1

Query: 559 FGAETSERRQ-IGAQVQSLDEVAAGIG*HTHLSFSVVLSSPSRHHI-RVINRHAH 717
           FGA  SE  Q +  Q Q L  +   +  H HL  S  +S  ++HH+ + I++H H
Sbjct: 447 FGAHQSEHHQRLNQQQQPLQHL---LDCHGHLEQSTPISQQNQHHLSQQIHQHQH 498


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,101,015
Number of Sequences: 53049
Number of extensions: 837307
Number of successful extensions: 1974
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1969
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4106450400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)