Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1f16r
         (843 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   3.3  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    27   4.4  
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    26   7.7  

>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 18/86 (20%), Positives = 38/86 (44%)
 Frame = +1

Query: 196 NIRSVHICWLIKLHKYINLIKSRKISMYLTHYYKNNN*KSRLLSHCLSFKFRFNIVYQIY 375
           ++ S    W+ ++ +  N  +  ++++YL  + + NN   R +  CL F ++    Y I 
Sbjct: 253 DMSSCEALWISRMDELSNYERIEQLALYLLCWGEANN--VRFMPECLCFIYKVAYDYLIS 310

Query: 376 AQGSSQADISRVKFCLQKLII*LCNI 453
                Q + +   + L   I  L N+
Sbjct: 311 PSFKEQKNPAPKDYFLDNCITPLYNL 336


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -3

Query: 562 LIIYIKNGDPIAILIFFKMLNQVPSGTTTRKSSYFV 455
           +++Y+ + D    L FFK L+ VPS  +  +  + +
Sbjct: 754 ILLYLPHSDMAITLQFFKQLSMVPSSLSLLRKVHII 789


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 501 LSILKKIKIAIGSPFLIYIISNDFT*ILLSFF 596
           L  +KK  +A  SPF I    NDF    L++F
Sbjct: 223 LKTVKKEDLAFSSPFEITATRNDFVHAFLAWF 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,924,006
Number of Sequences: 5004
Number of extensions: 56026
Number of successful extensions: 136
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)