Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1f15r
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    72   9e-14
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    54   4e-08
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    28   2.0  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    27   3.5  
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    26   8.1  
SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3 family|Schizosa...    26   8.1  
SPBC29A3.21 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   8.1  

>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 72.1 bits (169), Expect = 9e-14
 Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
 Frame = -1

Query: 855 DNDHMFQCGVSGAPVTSWLYYNTMYTERYMGLPTPEDNLSGYEAGDVTLLVDKLAGHDFY 676
           +   +F  G++ APVT W  Y+++YTERYM L  P+ N  GY+   +           F+
Sbjct: 658 ETQDVFSYGMAVAPVTDWRLYDSVYTERYMDL--PQYNKEGYKNSQIHDYEKFKQLKRFF 715

Query: 675 IMHGNADDNVHYQNAAKLMRALQEKD-IPFEQMSYPDEAHSLA 550
           + HG  DDNVH+Q++  LM  L   +   ++   +PD AHS++
Sbjct: 716 VAHGTGDDNVHFQHSMHLMDGLNLANCYNYDMAVFPDSAHSIS 758


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 53.6 bits (123), Expect = 4e-08
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
 Frame = -1

Query: 870 LTL-VHDNDHMFQCGVSGAPVTSWLYYNTMYTERYMGLPTPEDN-LSGYEAGDVTLLVDK 697
           LTL + +N    + G   APVT W YY+  Y+E  +G  + +   +    A   +    K
Sbjct: 724 LTLKILENADFIKTGAVVAPVTDWRYYDAYYSENLLGAYSKQTTAIYDKTAVHYSENFRK 783

Query: 696 LAGHDFYIMHGNADDNVHYQNAAKLMRALQEKDI 595
           L G    ++HG +DDNVH +N  +L +A+ EK +
Sbjct: 784 LCG--LLVLHGTSDDNVHIENTMQLTKAMVEKGV 815


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1004

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 669  HGNADDNVHYQNAAKLMRALQEKDIPFEQMSY 574
            H NA  NV  +  AKL+  L  ++I F+++ Y
Sbjct: 965  HRNARKNVFIRKVAKLLMILNAEEIDFKRLFY 996


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 24/83 (28%), Positives = 33/83 (39%)
 Frame = -1

Query: 792 NTMYTERYMGLPTPEDNLSGYEAGDVTLLVDKLAGHDFYIMHGNADDNVHYQNAAKLMRA 613
           N  Y       P+PE + +   +      VD+LAG  F +  G   +  HY  A K   +
Sbjct: 67  NQSYVPSSSNEPSPESSSNSDSSSSDDSSVDRLAGDPFEL--GENFNLKHYLRAYK--DS 122

Query: 612 LQEKDIPFEQMSYPDEAHSLAGV 544
           LQ  DI           HS+ GV
Sbjct: 123 LQRDDIITRSSGVCMRDHSVYGV 145


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 790 YNVHGTLHGTSDSRRQFV 737
           +  +GTL+G SDSR+Q V
Sbjct: 609 FRTNGTLYGLSDSRKQAV 626


>SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -1

Query: 663 NADDNVHYQNAAKLMRALQEKDIPFEQMSYPDEAHSLAGVNM 538
           NA DN++Y++  K    + E    F Q  +   A S  G N+
Sbjct: 260 NALDNLNYEDREKAFSRVDELLCDFSQWPFDLHASSSVGANL 301


>SPBC29A3.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 100

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 297 CTRLLLELPLKHSFVNLN 244
           C R L    LKH++VNLN
Sbjct: 57  CQRFLFSSNLKHNYVNLN 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,551,322
Number of Sequences: 5004
Number of extensions: 73626
Number of successful extensions: 154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)